Functional Genomics and Proteomics Unit, Department of Biology, KULeuven, Leuven, Belgium.
Ann N Y Acad Sci. 2010 Jul;1200:1-14. doi: 10.1111/j.1749-6632.2010.05506.x.
Despite the general knowledge and repeated predictions of peptide G protein-coupled receptors following the elucidation of the Caenorhabditis elegans genome in 1998, only a few have been deorphanized so far. This was attributed to the apparent lack of coevolution between (neuro)peptides and their cognate receptors. To resolve this issue, we have used an in silico genomic data mining tool to identify the real putative peptide GPCRs in the C. elegans genome and then made a well-considered selection of orphan peptide GPCRs. To maximize our chances of a successful deorphanization, we adopted a combined reverse pharmacology approach. At this moment, we have successfully uncovered four C. elegans neuropeptide signaling systems that support the theory of receptor-ligand coevolution. All four systems are extremely well conserved within nematodes and show a high degree of similarity with their vertebrate and arthropod counterparts. Our data indicate that these four neuropeptide signaling systems have been well conserved during the course of evolution and that they were already well established prior to the divergence of protostomes and deuterostomes.
尽管在 1998 年阐明秀丽隐杆线虫基因组之后,人们普遍了解并反复预测了肽 G 蛋白偶联受体,但到目前为止,只有少数几种被去孤儿化。这归因于(神经)肽与其同源受体之间明显缺乏共同进化。为了解决这个问题,我们使用了一种基于基因组的计算数据挖掘工具来鉴定秀丽隐杆线虫基因组中的真正假定肽 GPCR,然后对孤儿肽 GPCR 进行了精心选择。为了最大限度地提高去孤儿化的成功机会,我们采用了联合反向药理学方法。目前,我们已经成功揭示了四个支持受体 - 配体共同进化理论的秀丽隐杆线虫神经肽信号系统。所有四个系统在线虫中都非常保守,并与它们的脊椎动物和节肢动物对应物具有高度相似性。我们的数据表明,这四个神经肽信号系统在进化过程中得到了很好的保守,并且在原口动物和后口动物分化之前就已经很好地建立了。