Department of Chemistry, University of Miami, 1301 Memorial Drive, Coral Gables, Florida 33146, USA.
J Phys Chem B. 2010 Aug 26;114(33):10860-75. doi: 10.1021/jp104294x.
In this comparative DFT study, the hydrolysis of a peptide bond (Phe1-Phe2) by the following three types of catalysts has been studied: (1) beta-secretase (BACE2), (2) matrix metalloproteinase (MMP) and insulin degrading enzyme (IDE), and (3) Pd(H(2)O)(4) (I(MPC)) and Pd(2)(mu-OH)([18]aneN(6)) (I(DPC)). The computed energetics predict that among these catalysts, the Zn(2+) metal center containing MMP is the most efficient in catalyzing this reaction. The two active site aspartate residues containing BACE2 catalyze this reaction with 5.0 kcal/mol higher barrier than MMP. The substitution of a His ligand with Glu in the metal center of MMP generates the active site of IDE that catalyzes the reaction with a 6.9 kcal/mol higher barrier than MMP. Both artificial peptidases I(MPC) and I(DPC) catalyze this reaction with significantly high barriers of 35.4 and 31.0 kcal/mol, respectively. The computed energetics of all the catalysts are in line with the available experimental and theoretical data.
在这项比较密度泛函理论(DFT)研究中,研究了以下三种类型的催化剂对肽键(Phe1-Phe2)的水解作用:(1)β-分泌酶(BACE2),(2)基质金属蛋白酶(MMP)和胰岛素降解酶(IDE),以及(3)[Pd(H(2)O)(4)](2+)(I(MPC))和[Pd(2)(μ-OH)([18]aneN(6))](3+)(I(DPC))。计算出的能量学预测,在这些催化剂中,含有 Zn(2+)金属中心的 MMP 是最有效地催化此反应的催化剂。含有 BACE2 的两个活性位点天冬氨酸残基催化此反应的能垒比 MMP 高 5.0 kcal/mol。在 MMP 的金属中心将 His 配体替换为 Glu 会产生催化此反应的 IDE 的活性位点,其能垒比 MMP 高 6.9 kcal/mol。两种人工肽酶 I(MPC)和 I(DPC)分别以 35.4 和 31.0 kcal/mol 的高能垒催化此反应。所有催化剂的计算能量学都与可用的实验和理论数据一致。