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A preoccupied position on nucleosomes.

作者信息

Pugh B Franklin

出版信息

Nat Struct Mol Biol. 2010 Aug;17(8):923. doi: 10.1038/nsmb0810-923.

DOI:10.1038/nsmb0810-923

PMID:20683475

Abstract

摘要

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The DNA-encoded nucleosome organization of a eukaryotic genome.

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Translational and rotational settings of H2A.Z nucleosomes across the Saccharomyces cerevisiae genome.

Nature. 2007 Mar 29;446(7135):572-6. doi: 10.1038/nature05632.

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相似文献

A preoccupied position on nucleosomes.

Nat Struct Mol Biol. 2010 Aug;17(8):923. doi: 10.1038/nsmb0810-923.

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Nature. 2006 Aug 17;442(7104):750-2. doi: 10.1038/442750a.

Removal of promoter nucleosomes by disassembly rather than sliding in vivo.

Mol Cell. 2004 Jun 4;14(5):667-73. doi: 10.1016/j.molcel.2004.05.013.

Establishment of a promoter-based chromatin architecture on recently replicated DNA can accommodate variable inter-nucleosome spacing.

Nucleic Acids Res. 2016 Sep 6;44(15):7189-203. doi: 10.1093/nar/gkw331. Epub 2016 Apr 22.

[Nucleosome assembly: chromatin and epigenetics].

Seikagaku. 2005 Mar;77(3):213-21.

Weakly positioned nucleosomes enhance the transcriptional competency of chromatin.

PLoS One. 2010 Sep 24;5(9):e12984. doi: 10.1371/journal.pone.0012984.

Translational and rotational settings of H2A.Z nucleosomes across the Saccharomyces cerevisiae genome.

Nature. 2007 Mar 29;446(7135):572-6. doi: 10.1038/nature05632.

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Mol Cell Biol. 2016 Aug 12;36(17):2262-71. doi: 10.1128/MCB.00195-16. Print 2016 Sep 1.

Chromatin marks and machines, the missing nucleosome is a theme: gene regulation up and downstream.

Mol Cell. 2005 Feb 4;17(3):323-30. doi: 10.1016/j.molcel.2005.01.013.

The Chd1 chromatin remodeler shifts hexasomes unidirectionally.

Elife. 2016 Dec 29;5:e21356. doi: 10.7554/eLife.21356.

引用本文的文献

Multimodal epigenetic sequencing analysis (MESA) of cell-free DNA for non-invasive colorectal cancer detection.

Genome Med. 2024 Jan 16;16(1):9. doi: 10.1186/s13073-023-01280-6.

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PLoS Pathog. 2021 Jan 26;17(1):e1009272. doi: 10.1371/journal.ppat.1009272. eCollection 2021 Jan.

Precise genome-wide mapping of single nucleosomes and linkers in vivo.

Genome Biol. 2018 Feb 9;19(1):19. doi: 10.1186/s13059-018-1398-0.

Nucleosome Positioning.

ISRN Mol Biol. 2012 Oct 15;2012:245706. doi: 10.5402/2012/245706. eCollection 2012.

Noncoding Transcription Is a Driving Force for Nucleosome Instability in spt16 Mutant Cells.

Mol Cell Biol. 2016 Jun 15;36(13):1856-67. doi: 10.1128/MCB.00152-16. Print 2016 Jul 1.

Chromatin accessibility: a window into the genome.

Epigenetics Chromatin. 2014 Nov 20;7(1):33. doi: 10.1186/1756-8935-7-33. eCollection 2014.

Predicting the human epigenome from DNA motifs.

Nat Methods. 2015 Mar;12(3):265-72, 7 p following 272. doi: 10.1038/nmeth.3065. Epub 2014 Sep 21.

A compendium of nucleosome and transcript profiles reveals determinants of chromatin architecture and transcription.

PLoS Genet. 2013 May;9(5):e1003479. doi: 10.1371/journal.pgen.1003479. Epub 2013 May 2.

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Genome Res. 2013 Feb;23(2):341-51. doi: 10.1101/gr.142067.112. Epub 2012 Nov 28.

本文引用的文献

Nucleosome sequence preferences influence in vivo nucleosome organization.

Nat Struct Mol Biol. 2010 Aug;17(8):918-20. doi: 10.1038/nsmb0810-918.

Intrinsic histone-DNA interactions are not the major determinant of nucleosome positions in vivo.

Nat Struct Mol Biol. 2009 Aug;16(8):847-52. doi: 10.1038/nsmb.1636. Epub 2009 Jul 20.

The DNA-encoded nucleosome organization of a eukaryotic genome.

Nature. 2009 Mar 19;458(7236):362-6. doi: 10.1038/nature07667. Epub 2008 Dec 17.

Translational and rotational settings of H2A.Z nucleosomes across the Saccharomyces cerevisiae genome.

Nature. 2007 Mar 29;446(7135):572-6. doi: 10.1038/nature05632.

A genomic code for nucleosome positioning.

Nature. 2006 Aug 17;442(7104):772-8. doi: 10.1038/nature04979. Epub 2006 Jul 19.