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WikiPathways 的生物转化途径图谱可直接可视化药物代谢相关的表达变化。

Biotransformation pathway maps in WikiPathways enable direct visualization of drug metabolism related expression changes.

机构信息

Department of Health Risk Analysis and Toxicology, Maastricht University, The Netherlands.

出版信息

Drug Discov Today. 2010 Oct;15(19-20):851-8. doi: 10.1016/j.drudis.2010.08.002. Epub 2010 Aug 11.

Abstract

In recent decades, our knowledge of the genetics and functional genomics of drug-metabolizing enzymes has increased and a wealth of data on drug-related 'omics' has become available. Despite the availability of large amounts of biological information on xenobiotic biotransformation, the number of available biotransformation pathway maps that can easily be used for visualization of multiple omics data is limited. Here, we created integrated biotransformation pathway maps suitable for multiple omics analysis using PathVisio. The ease of visualizing data on these maps was demonstrated by using published microarray data from human hepatocyte-like cell models, exemplifying - where a sufficient capacity for metabolizing chemicals is a prerequisite for a suited model - how the biotransformation pathway maps can be used for model selection.

摘要

近几十年来,我们对药物代谢酶的遗传学和功能基因组学的了解有所增加,并且出现了大量与药物相关的“组学”数据。尽管有大量关于外源性生物转化的生物学信息,但可用于可视化多种组学数据的可用生物转化途径图谱的数量有限。在这里,我们使用 PathVisio 创建了适合多种组学分析的综合生物转化途径图谱。通过使用来自人源肝细胞样细胞模型的已发表微阵列数据来证明这些图谱上数据可视化的易用性,举例说明了 - 其中有足够的能力代谢化学品是合适模型的前提 - 生物转化途径图谱如何用于模型选择。

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