使用 ATTED-II 鉴定与 CPSAR1 共表达的基因。
Genes co-expressed with CPSAR1 identified using ATTED-II.
机构信息
Department of Plant and Environmental Sciences, University of Gothenburg, Gothenburg, Sweden.
出版信息
Plant Signal Behav. 2010 Sep;5(9):1141-3. doi: 10.4161/psb.5.9.12674. Epub 2010 Sep 1.
Abstract
Identification of interacting proteins will help to investigate further the relationship between CPSAR1 and the vesicle transport system or the ribosomes. Thus, we adopted a bioinformatic approach, using the publicly available Arabidopsis thaliana trans-factor and cis-element prediction database, ATTED-II (http://atted.jp/), to identify putative protein interactors. The proteins directly linked to CPSAR1 were almost exclusively nucleus encoded and several were involved in protein synthesis of which three were thylakoid localized. The list of putative interacting proteins does not exclude any of the previous proposed actions of CPSAR1 but encourage more detailed examination of the role of CPSAR1.
摘要
鉴定相互作用的蛋白质将有助于进一步研究 CPSAR1 与囊泡运输系统或核糖体之间的关系。因此，我们采用了生物信息学方法，利用公开的拟南芥转录因子和顺式作用元件预测数据库 ATTED-II（http://atted.jp/）来鉴定可能的蛋白质相互作用物。与 CPSAR1 直接相关的蛋白质几乎完全是核编码的，其中有几个与蛋白质合成有关，有三个定位于类囊体。潜在的相互作用蛋白列表并不排除之前提出的 CPSAR1 的任何作用，但鼓励更详细地研究 CPSAR1 的作用。
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