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二甲基亚砜诱导的鸡卵清白蛋白溶菌酶变性。

DMSO-induced denaturation of hen egg white lysozyme.

机构信息

Adolphe Merkle Institute, University of Fribourg, Route de l'Ancienne Papeterie, P.O. Box 209, CH-1723 Marly 1, Switzerland.

出版信息

J Phys Chem B. 2010 Sep 16;114(36):11875-83. doi: 10.1021/jp103515b.

DOI:10.1021/jp103515b
PMID:20731407
Abstract

We report on the size, shape, structure, and interactions of lysozyme in the ternary system lysozyme/DMSO/water at low protein concentrations. Three structural regimes have been identified, which we term the "folded" (0 < φ(DMSO) < 0.7), "unfolded" (0.7 ≤ φ(DMSO) < 0.9), and "partially collapsed" (0.9 ≤ φ(DMSO) < 1.0) regime. Lysozyme resides in a folded conformation with an average radius of gyration of 1.3 ± 0.1 nm for φ(DMSO) < 0.7 and unfolds (average R(g) of 2.4 ± 0.1 nm) above φ(DMSO) > 0.7. This drastic change in the protein's size coincides with a loss of the characteristic tertiary structure. It is preceded by a compaction of the local environment of the tryptophan residues and accompanied by a large increase in the protein's overall flexibility. In terms of secondary structure, there is a gradual loss of α-helix and concomitant increase of β-sheet structural elements toward φ(DMSO) = 0.7, while an increase in φ(DMSO) at even higher DMSO volume fractions reduces the presence of both α-helix and β-sheet secondary structural elements. Protein-protein interactions remain overall repulsive for all values of φ(DMSO). An attempt is made to relate these structural changes to the three most important physical mechanisms that underlie them: the DMSO/water microstructure is strongly dependent on the DMSO volume fraction, DMSO acts as a strong H-bond acceptor, and DMSO is a bad solvent for the protein backbone and a number of relatively polar side groups, but a good solvent for relatively apolar side groups, such as tryptophan.

摘要

我们报告了在低蛋白质浓度下溶菌酶/ DMSO/水三元体系中溶菌酶的大小、形状、结构和相互作用。已经确定了三个结构区域,我们将其称为“折叠”(0 < φ(DMSO) < 0.7)、“展开”(0.7 ≤ φ(DMSO) < 0.9)和“部分塌陷”(0.9 ≤ φ(DMSO) < 1.0)区域。溶菌酶以折叠构象存在,在 φ(DMSO) < 0.7 时平均回转半径为 1.3 ± 0.1nm,在 φ(DMSO) > 0.7 时展开(平均 R(g)为 2.4 ± 0.1nm)。这种蛋白质大小的剧烈变化与特征三级结构的丧失相一致。它之前是色氨酸残基局部环境的压缩,并伴随着蛋白质整体灵活性的大幅增加。就二级结构而言,在 φ(DMSO) = 0.7 时,α-螺旋逐渐丢失,β-折叠结构元素相应增加,而在 DMSO 体积分数更高时,α-螺旋和β-折叠二级结构元素的存在增加。在所有 DMSO 体积分数下,蛋白质-蛋白质相互作用仍然总体上是排斥的。我们试图将这些结构变化与它们所依据的三个最重要的物理机制联系起来:DMSO/水微结构强烈依赖于 DMSO 体积分数,DMSO 作为强氢键受体,以及 DMSO 是蛋白质主链和许多相对极性侧基的不良溶剂,但对相对非极性侧基,如色氨酸,是良好的溶剂。

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