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利用红外光谱和计算方法表征小肽与二甲基亚砜之间的相互作用

Characterizing Interactions Between Small Peptides and Dimethyl Sulfoxide Using Infrared Spectroscopy and Computational Methods.

作者信息

Panuszko Aneta, Pastwa Przemysław, Gajewski Jacek, Bruździak Piotr

机构信息

Department of Physical Chemistry, Gdańsk University of Technology, Narutowicza 11/12, 80-233 Gdańsk, Poland.

出版信息

Molecules. 2024 Dec 12;29(24):5869. doi: 10.3390/molecules29245869.

Abstract

This study provides a comprehensive analysis of the interactions between dimethyl sulfoxide (DMSO) and two small peptides, diglycine and -acetyl-glycine-methylamide (NAGMA), in aqueous solutions using FTIR spectroscopy and density functional theory (DFT) calculations. ATR-FTIR spectroscopy and DFT results revealed that DMSO does not form direct bonds with the peptides, suggesting that DMSO indirectly influences both peptides by modifying the surrounding water molecules. The analysis of HDO spectra allowed for the isolation of the contribution of water molecules that were simultaneously altered by the peptide and DMSO, and it also explained the changes in the hydration shells of the peptides in the presence of DMSO. In the DMSO-diglycine system, DMSO contributes to the additional strengthening of water hydrogen bonds in the reinforced hydration sphere of diglycine. In contrast, DMSO has a more moderate effect on the water molecules surrounding NAGMA due to the similarity of their hydration shells, leading to a slight weakening of the hydrogen bonds in the NAGMA hydration sphere. DFT/ONIOM calculations confirmed these observations. These findings demonstrated that DMSO influences peptide stability differentially based on their structural characteristics.

摘要

本研究利用傅里叶变换红外光谱(FTIR)和密度泛函理论(DFT)计算,对二甲基亚砜(DMSO)与两种小肽——二甘氨酸和N - 乙酰甘氨酸甲酯(NAGMA)在水溶液中的相互作用进行了全面分析。衰减全反射傅里叶变换红外光谱(ATR - FTIR)和DFT结果表明,DMSO与肽不形成直接键合,这表明DMSO通过改变周围水分子间接影响两种肽。对重水(HDO)光谱的分析能够分离出同时受到肽和DMSO改变的水分子的贡献,并且还解释了在存在DMSO的情况下肽的水合壳层的变化。在DMSO - 二甘氨酸体系中,DMSO有助于在二甘氨酸增强的水合球中进一步加强水的氢键。相比之下,由于NAGMA水合壳层的相似性,DMSO对NAGMA周围水分子的影响更为温和,导致NAGMA水合球中氢键略有减弱。DFT / ONIOM计算证实了这些观察结果。这些发现表明,DMSO根据肽的结构特征对肽稳定性产生不同影响。

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