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鱼类 DNA 条码库计划,即 FISH-BOL。

The campaign to DNA barcode all fishes, FISH-BOL.

机构信息

CSIRO Wealth from Oceans Flagship, CSIRO Marine and Atmospheric Research, GPO Box 1538, Hobart, Tasmania 7001, Australia.

出版信息

J Fish Biol. 2009 Feb;74(2):329-56. doi: 10.1111/j.1095-8649.2008.02080.x.

Abstract

FISH-BOL, the Fish Barcode of Life campaign, is an international research collaboration that is assembling a standardized reference DNA sequence library for all fishes. Analysis is targeting a 648 base pair region of the mitochondrial cytochrome c oxidase I (COI) gene. More than 5000 species have already been DNA barcoded, with an average of five specimens per species, typically vouchers with authoritative identifications. The barcode sequence from any fish, fillet, fin, egg or larva can be matched against these reference sequences using BOLD; the Barcode of Life Data System (http://www.barcodinglife.org). The benefits of barcoding fishes include facilitating species identification, highlighting cases of range expansion for known species, flagging previously overlooked species and enabling identifications where traditional methods cannot be applied. Results thus far indicate that barcodes separate c. 98 and 93% of already described marine and freshwater fish species, respectively. Several specimens with divergent barcode sequences have been confirmed by integrative taxonomic analysis as new species. Past concerns in relation to the use of fish barcoding for species discrimination are discussed. These include hybridization, recent radiations, regional differentiation in barcode sequences and nuclear copies of the barcode region. However, current results indicate these issues are of little concern for the great majority of specimens.

摘要

FISH-BOL(生命鱼类条码计划)是一个国际研究合作项目,旨在为所有鱼类建立一个标准化的参考 DNA 序列文库。分析的目标是线粒体细胞色素 c 氧化酶 I(COI)基因的 648 个碱基对区域。已有超过 5000 种鱼类被 DNA 条码化,平均每个物种有 5 个标本,通常是带有权威鉴定的凭证标本。任何鱼类的条码序列,无论是鱼片、鱼鳍、鱼卵还是幼鱼,都可以与这些参考序列进行比对,使用的是 BOLD(生命条码数据系统)(http://www.barcodinglife.org)。鱼类条码化的好处包括促进物种鉴定、突出已知物种的分布范围扩大情况、标记以前被忽视的物种以及在传统方法无法应用的情况下进行鉴定。迄今为止的结果表明,条码能够区分约 98%和 93%的已描述的海洋和淡水鱼类物种。几个具有不同条码序列的标本已通过综合分类学分析被确认为新物种。过去人们对鱼类条码用于物种鉴别存在一些担忧,包括杂交、近期辐射、条码序列的区域分化以及条码区域的核拷贝。然而,目前的结果表明,对于绝大多数标本来说,这些问题并不值得关注。

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