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细胞色素 c 氧化酶亚基 1 条码数据的鱼类 Nayband 国家公园在波斯湾和使用元数据标志分析几个隐种。

Cytochrome c oxidase subunit 1 barcode data of fish of the Nayband National Park in the Persian Gulf and analysis using meta-data flag several cryptic species.

机构信息

Department Biotechnology, College of Science, University of Tehran, No 13, Shafiie Alley, Qods St., Enghelab St., 14155-6455, Tehran, Iran.

出版信息

Mol Ecol Resour. 2011 May;11(3):461-72. doi: 10.1111/j.1755-0998.2011.02989.x. Epub 2011 Feb 10.

DOI:10.1111/j.1755-0998.2011.02989.x
PMID:21481204
Abstract

We provide cytochrome c oxidase subunit 1 (COI) barcode sequences of fishes of the Nayband National Park, Persian Gulf, Iran. Industrial activities, ecological considerations and goals of The Fish Barcode of Life campaign make it crucial that fish species residing in the park be identified. To the best of our knowledge, this is the first report of barcoding data on fishes of the Persian Gulf. We examined 187 individuals representing 76 species, 56 genera and 32 families. The data flagged potentially cryptic species of Gerres filamentosus and Plectorhinchus schotaf. 16S rDNA data on these species are provided. Exclusion of these two potential cryptic species resulted in a mean COI intraspecific distance of 0.18%, and a mean inter- to intraspecific divergence ratio of 66.7. There was no overlap between maximum Kimura 2-parameter distances among conspecifics (1.66%) and minimum distance among congeneric species (6.19%). Barcodes shared among species were not observed. Neighbour-joining analysis showed that most species formed cohesive sequence units with little variation. Finally, the comparison of 16 selected species from this study with meta-data of conspecifics from Australia, India, China and South Africa revealed high interregion divergences and potential existence of six cryptic species. Pairwise interregional comparisons were more informative than global divergence assessments with regard to detection of cryptic variation. Our analysis exemplifies optimal use of the expanding barcode data now becoming available.

摘要

我们提供了伊朗波斯湾 Nayband 国家公园鱼类的细胞色素 c 氧化酶亚基 1(COI)条形码序列。工业活动、生态考虑因素以及“生命鱼类条形码计划”的目标使得确定居住在该公园的鱼类物种变得至关重要。据我们所知,这是波斯湾鱼类条形码数据的首次报告。我们检查了代表 76 种、56 属和 32 科的 187 个个体。这些数据标记了 Gerres filamentosus 和 Plectorhinchus schotaf 的潜在隐种。我们提供了这些物种的 16S rDNA 数据。排除这两个潜在的隐种后,COI 种内距离的平均值为 0.18%,种间到种内的分化比率平均值为 66.7。同种内最大 Kimura 2-参数距离(1.66%)和同种间最小距离(6.19%)之间没有重叠。未观察到种间共享的条形码。邻接法分析表明,大多数物种形成了具有较小变异的凝聚序列单元。最后,将本研究的 16 种选定物种与来自澳大利亚、印度、中国和南非的同种元数据进行比较,揭示了高区域间分化和可能存在的 6 种隐种。与全球差异评估相比,种间区域间的成对比较在检测隐种变异方面更具信息量。我们的分析说明了如何最佳利用现在可获得的扩展条形码数据。

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