Endocrine and Diabetes Centre, 15-12-15 Krishananagar, Visakhapatnam 530 002, India.
Med Hypotheses. 2010 Dec;75(6):648-51. doi: 10.1016/j.mehy.2010.08.008. Epub 2010 Aug 24.
Butyrylcholinesterase may have a role in a number of metabolic functions and could affect the expression of insulin resistance syndrome. We present our integrated work using clinical, biochemical and bioinformatic approaches to delineate the possible function of this enzyme. Initially, we constructed a phylogenic tree with nucleotides and amino acid sequences and showed the existence of similar sequences in bacteria, plants and in other animals. We also demonstrated a possible pathogenic role for BChE in the common existence of insulin resistance, type 2 diabetes and Alzheimer's disease by in silico method and followed it up with a diabetic mouse study where cognition was slowed along with changes in BChE levels. In the next group of in silico studies, we employed THEMATICS method to identify the amino acids at the active site and later performed docking studies with drugs. THEMATICS predicted two clusters of ionisable amino acid residues that are in proximity: one with two residues and another with 11 showed perturbation in the THEMATICS curves. Using ISIS/Draw 2.5SP4, ARGUSLAB 4.0.1 and HEX 5.1. software. 3-D ligands were docked with BChE motif (from PDB). We did not find any of the ligands studied with significant docking distance, indicating they did not have direct interaction with the active site. Subsequently we performed in silico studies to compare the secondary structure and domain of BChE. Protein-protein interaction showed the following intersections with BChE UBE21, CHAT, APOE, AATF, DF ALDH9A1, PDHX, PONI PSME3 and ATP6VOA2. The integrative physiological roles of proteins with poorly known functions can be approached by generating leads in silico, which can be studied in vivo, setting into movement an iterative process.
丁酰胆碱酯酶可能在许多代谢功能中发挥作用,并可能影响胰岛素抵抗综合征的表达。我们通过临床、生化和生物信息学方法综合研究,以阐明该酶的可能功能。首先,我们构建了核苷酸和氨基酸序列的系统发育树,并表明在细菌、植物和其他动物中存在类似的序列。我们还通过计算机模拟方法证明了 BChE 在胰岛素抵抗、2 型糖尿病和阿尔茨海默病的共同存在中可能具有致病作用,并随后在糖尿病小鼠研究中进行了跟进,在该研究中,认知能力随着 BChE 水平的变化而减慢。在接下来的一组计算机模拟研究中,我们采用 THEMATICS 方法来鉴定活性部位的氨基酸,然后用药物进行对接研究。THEMATICS 预测了两个临近的可离子化氨基酸残基簇:一个有两个残基,另一个有 11 个残基,THEMATICS 曲线出现波动。使用 ISIS/Draw 2.5SP4、ARGUSLAB 4.0.1 和 HEX 5.1. 软件。3-D 配体与 BChE 基序(来自 PDB)对接。我们没有发现研究的任何配体具有显著的对接距离,表明它们与活性位点没有直接相互作用。随后,我们进行了计算机模拟研究,以比较 BChE 的二级结构和结构域。蛋白质-蛋白质相互作用显示与 BChE 有以下交点:UBE21、CHAT、APOE、AATF、DF ALDH9A1、PDHX、PON1 PSME3 和 ATP6VOA2。可以通过在计算机上生成先导物来研究功能未知的蛋白质的综合生理作用,然后可以在体内进行研究,从而启动一个迭代过程。