Makhatadze G I, Medvedkin V N, Privalov P L
Institute of Protein Research, Academy of Sciences of the USSR, Moscow Region.
Biopolymers. 1990;30(11-12):1001-10. doi: 10.1002/bip.360301102.
The partial molar volumes of various compounds that model protein constituent groups, such as tripeptides (Gly-X-Gly, where X = Gly, Ala, Val, Leu, Ile, Pro, Met, His, Ser), homopeptides (Glyn, n = 3,4,5), and simple organic analogues of amino acid side chains (methanol, acetamide, propanamide, acetic acid, propanoic acid, n-butanamine, n-butanamine nitrate, n-propylguanidine nitrate, 4-methylphenol), have been determined in aqueous solution with a vibrational densimeter in the temperature range of 5-85 degrees C. The partial molar volumes of amino acid side chains and the peptide unit were estimated from the data obtained. Assuming additivity of component groups, the partial molar volumes of polypeptide chains of several proteins over a broad temperature range were calculated. The partial molar volume functions of four proteins (myoglobin, cytochrome C, ribonuclease A, lysozyme) were compared with those determined experimentally for the unfolded and native forms of these proteins. It has been shown that the average deviation of the calculated functions from the experimental ones does not exceed 3% over the temperature range studied.
利用振动密度计在5 - 85摄氏度的温度范围内,测定了各种模拟蛋白质组成基团的化合物的偏摩尔体积,这些化合物包括三肽(甘氨酸-X-甘氨酸,其中X = 甘氨酸、丙氨酸、缬氨酸、亮氨酸、异亮氨酸、脯氨酸、甲硫氨酸、组氨酸、丝氨酸)、同型肽(Glyn,n = 3、4、5)以及氨基酸侧链的简单有机类似物(甲醇、乙酰胺、丙酰胺、乙酸、丙酸、正丁胺、硝酸正丁胺、硝酸正丙基胍、4-甲基苯酚)。根据所得数据估算了氨基酸侧链和肽单元的偏摩尔体积。假设组成基团具有加和性,计算了几种蛋白质在较宽温度范围内的多肽链偏摩尔体积。将四种蛋白质(肌红蛋白、细胞色素C、核糖核酸酶A、溶菌酶)的偏摩尔体积函数与针对这些蛋白质的未折叠和天然形式实验测定的函数进行了比较。结果表明,在所研究的温度范围内,计算函数与实验函数的平均偏差不超过3%。