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磷酸戊糖循环的博弈:一种研究进化过程中代谢途径设计优化的数学方法。

The game of the pentose phosphate cycle: a mathematical approach to study the optimization in design of metabolic pathways during evolution.

作者信息

Meléndez-Hevia E

机构信息

Departamento de Bioquímica, Facultad de Biología, Universidad de La Laguna, Tenerife, Canary Islands, Spain.

出版信息

Biomed Biochim Acta. 1990;49(8-9):903-16.

PMID:2082930
Abstract

The optimization of the pathway structure of the pentose phosphate cycle is studied by means of abstraction to a model designed as a mathematical game of combinatorial optimization. The objective of the game is to convert pentoses into hexoses, which is the aim of the non-oxidative phase of the metabolic cycle, and it includes two kinds of hypotheses: (a) the hypothesis of the mechanisms based on the enzyme mechanisms available to cells, and (b) the hypothesis of simplicity which establishes that the optimal solution must have the least number of steps and the least number of carbons in every intermediate. A mathematical proof of the optimal solution of this problem is given, and it is demonstrated that such a solution is the same as occurs in cells. The Calvin cycle and the "L-type" of the pentose cycle are also studied by a similar method, and equivalent results are obtained. These results point out the role which the hypothesis of simplicity may have played in the evolution of metabolic pathways.

摘要

通过将戊糖磷酸循环的途径结构抽象为一个设计为组合优化数学博弈的模型,来研究其优化问题。该博弈的目标是将戊糖转化为己糖,这是代谢循环非氧化阶段的目标,它包括两种假设:(a)基于细胞可用酶机制的机制假设,以及(b)简单性假设,该假设确定最优解必须具有最少的步骤数和每个中间产物中最少的碳原子数。给出了该问题最优解的数学证明,并证明这样的解与细胞中出现的解相同。还用类似方法研究了卡尔文循环和戊糖循环的“L型”,并得到了等效结果。这些结果指出了简单性假设在代谢途径进化中可能发挥的作用。

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