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利用詹森不等式解释钙振荡在蛋白激活中的作用。

Using Jensen's inequality to explain the role of regular calcium oscillations in protein activation.

机构信息

Department of Bioinformatics, Friedrich Schiller University Jena, Ernst-Abbe-Platz 2, D-07743 Jena, Germany.

出版信息

Phys Biol. 2010 Sep 10;7(3):036009. doi: 10.1088/1478-3975/7/3/036009.

DOI:10.1088/1478-3975/7/3/036009
PMID:20834115
Abstract

Oscillations of cytosolic Ca(2 +) are very important for cellular signalling in excitable and non-excitable cells. The information of various extracellular stimuli is encoded into oscillating patterns of Ca(2 +) that subsequently lead to the activation of different Ca(2 +)-sensitive target proteins in the cell. The question remains, however, why this information is transmitted by means of an oscillating rather than a constant signal. Here we show that, in fact, Ca(2 +) oscillations can achieve a better activation of target proteins than a comparable constant signal with the same amount of Ca(2 +) used. For this we use Jensen's inequality that describes the relation between the function value of the average of a set of argument values and the average of the function values of the arguments from that set. We analyse the role of the cooperativity of the binding of Ca(2 +) and of zero-order ultrasensitivity, which are two properties that are often observed in experiments on the activation of Ca(2 +)-sensitive target proteins. Our results apply to arbitrary oscillation shapes and a very general decoding model, thus generalizing the observations of several previous studies. We compare our results with data from experimental studies investigating the activation of nuclear factor of activated T cells (NFAT) and Ras by oscillatory and constant signals. Although we are restricted to specific approximations due to the lack of detailed kinetic data, we find good qualitative agreement with our theoretical predictions.

摘要

细胞质 Ca(2+) 的震荡对于可兴奋和非兴奋细胞的细胞信号传递非常重要。各种细胞外刺激的信息被编码为 Ca(2+)的震荡模式,随后导致细胞中不同的 Ca(2+)-敏感靶蛋白的激活。然而,问题仍然是,为什么这种信息是通过震荡而不是恒定信号来传递的。在这里,我们表明,实际上,Ca(2+)震荡可以比使用相同量 Ca(2+)的可比恒定信号更好地激活靶蛋白。为此,我们使用了 Jensen 不等式,该不等式描述了一组参数值的平均值的函数值与该参数值集合的函数值平均值之间的关系。我们分析了 Ca(2+)结合的协同性和零阶超敏性的作用,这是在研究 Ca(2+)-敏感靶蛋白激活的实验中经常观察到的两个特性。我们的结果适用于任意的震荡形状和非常通用的解码模型,因此概括了以前的几项研究的观察结果。我们将我们的结果与研究核因子激活 T 细胞 (NFAT) 和 Ras 的振荡和恒定信号激活的实验数据进行了比较。尽管由于缺乏详细的动力学数据,我们受到特定近似的限制,但我们发现与我们的理论预测有很好的定性一致性。

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