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二维和三维动态细胞核图像的非刚性配准,以改善亚细胞粒子运动的分类。

Nonrigid registration of 2-D and 3-D dynamic cell nuclei images for improved classification of subcellular particle motion.

机构信息

Biomedical Computer Vision Group, Department of Bioinformatics and Functional Genomics, University of Heidelberg, D-69120 Heidelberg, Germany.

出版信息

IEEE Trans Image Process. 2011 Apr;20(4):1011-22. doi: 10.1109/TIP.2010.2076377. Epub 2010 Sep 13.

DOI:10.1109/TIP.2010.2076377
PMID:20840894
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3282047/
Abstract

The observed motion of subcellular particles in fluorescence microscopy image sequences of live cells is generally a superposition of the motion and deformation of the cell and the motion of the particles. Decoupling the two types of movements to enable accurate classification of the particle motion requires the application of registration algorithms. We have developed an intensity-based approach for nonrigid registration of multichannel microscopy image sequences of cell nuclei. First, based on 3-D synthetic images we demonstrate that cell nucleus deformations change the observed motion types of particles and that our approach allows to recover the original motion. Second, we have successfully applied our approach to register 2-D and 3-D real microscopy image sequences. A quantitative experimental comparison with previous approaches for nonrigid registration of cell microscopy has also been performed.

摘要

活细胞荧光显微镜图像序列中观察到的亚细胞粒子的运动通常是细胞运动和变形与粒子运动的叠加。为了实现粒子运动的准确分类,需要应用配准算法来解耦这两种运动。我们已经开发了一种基于强度的方法,用于对细胞核的多通道显微镜图像序列进行非刚性配准。首先,基于 3D 合成图像,我们证明了细胞核变形会改变粒子的运动类型,并且我们的方法可以恢复原始运动。其次,我们已经成功地将我们的方法应用于 2D 和 3D 真实显微镜图像序列的配准。我们还与以前的细胞显微镜非刚性配准方法进行了定量实验比较。

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Nonrigid registration of 2-D and 3-D dynamic cell nuclei images for improved classification of subcellular particle motion.二维和三维动态细胞核图像的非刚性配准,以改善亚细胞粒子运动的分类。
IEEE Trans Image Process. 2011 Apr;20(4):1011-22. doi: 10.1109/TIP.2010.2076377. Epub 2010 Sep 13.
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本文引用的文献

1
Robust single-particle tracking in live-cell time-lapse sequences.活细胞延时序列中稳健的单粒子追踪
Nat Methods. 2008 Aug;5(8):695-702. doi: 10.1038/nmeth.1237. Epub 2008 Jul 20.
2
Nonrigid registration of 3-d multichannel microscopy images of cell nuclei.细胞核三维多通道显微镜图像的非刚性配准
IEEE Trans Image Process. 2008 Apr;17(4):493-9. doi: 10.1109/TIP.2008.918017.
3
A review of geometric transformations for nonrigid body registration.非刚体配准的几何变换综述。
IEEE Trans Med Imaging. 2008 Jan;27(1):111-28. doi: 10.1109/TMI.2007.904691.
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Fast point-based 3-D alignment of live cells.活细胞基于点的快速三维对齐
IEEE Trans Image Process. 2006 Aug;15(8):2388-96. doi: 10.1109/tip.2006.875209.
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A correlation-based approach to calculate rotation and translation of moving cells.一种基于相关性的方法来计算移动细胞的旋转和平移。
IEEE Trans Image Process. 2006 Jul;15(7):1939-51. doi: 10.1109/tip.2006.873434.
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SAGA interacting factors confine sub-diffusion of transcribed genes to the nuclear envelope.SAGA相互作用因子将转录基因的亚扩散限制在核膜上。
Nature. 2006 Jun 8;441(7094):770-3. doi: 10.1038/nature04752.
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Image stabilization and registration for tracking cells in the microvasculature.用于在微血管中跟踪细胞的图像稳定与配准
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9
4-D single particle tracking of synthetic and proteinaceous microspheres reveals preferential movement of nuclear particles along chromatin - poor tracks.合成微球和蛋白质微球的4D单粒子追踪揭示了核粒子沿染色质贫乏轨迹的优先运动。
BMC Cell Biol. 2004 Nov 23;5:45. doi: 10.1186/1471-2121-5-45.
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