The Structural Genomics Consortium, University of Toronto, Toronto, Ontario, Canada.
PLoS One. 2010 Sep 14;5(9):e12736. doi: 10.1371/journal.pone.0012736.
Pyruvate kinase (PK), which catalyzes the final step in glycolysis converting phosphoenolpyruvate to pyruvate, is a central metabolic regulator in most organisms. Consequently PK represents an attractive therapeutic target in cancer and human pathogens, like Apicomplexans. The phylum Aplicomplexa, a group of exclusively parasitic organisms, includes the genera Plasmodium, Cryptosporidium and Toxoplasma, the etiological agents of malaria, cryptosporidiosis and toxoplasmosis respectively. Toxoplasma gondii infection causes a mild illness and is a very common infection affecting nearly one third of the world's population.
METHODOLOGY/PRINCIPAL FINDINGS: We have determined the crystal structure of the PK1 enzyme from T. gondii, with the B domain in the open and closed conformations. We have also characterized its enzymatic activity and confirmed glucose-6-phosphate as its allosteric activator. This is the first description of a PK enzyme in a closed inactive conformation without any bound substrate. Comparison of the two tetrameric TgPK1 structures indicates a reorientation of the monomers with a concomitant change in the buried surface among adjacent monomers. The change in the buried surface was associated with significant B domain movements in one of the interacting monomers.
We hypothesize that a loop in the interface between the A and B domains plays an important role linking the position of the B domain to the buried surface among monomers through two α-helices. The proposed model links the catalytic cycle of the enzyme with its domain movements and highlights the contribution of the interface between adjacent subunits. In addition, an unusual ordered conformation was observed in one of the allosteric binding domains and it is related to a specific apicomplexan insertion. The sequence and structural particularity would explain the atypical activation by a mono-phosphorylated sugar. The sum of peculiarities raises this enzyme as an emerging target for drug discovery.
丙酮酸激酶(PK)催化糖酵解的最后一步,将磷酸烯醇丙酮酸转化为丙酮酸,是大多数生物体的中心代谢调节剂。因此,PK 是癌症和人体病原体(如 Apicomplexans)的一个有吸引力的治疗靶点。 Apicomplexa 门是一组专性寄生生物,包括疟原虫、隐孢子虫和刚地弓形虫属,分别是疟疾、隐孢子虫病和弓形体病的病原体。刚地弓形虫感染引起轻度疾病,是一种非常常见的感染,影响世界近三分之一的人口。
方法/主要发现:我们已经确定了来自刚地弓形虫的 PK1 酶的晶体结构,B 结构域处于开放和闭合构象。我们还对其酶活性进行了表征,并证实葡萄糖-6-磷酸是其别构激活剂。这是首次描述没有任何结合底物的 PK 酶处于封闭的非活性构象。比较两个四聚体 TgPK1 结构表明,单体发生重定向,相邻单体之间的埋藏表面发生变化。埋藏表面的变化与相互作用的单体之一的 B 结构域的显著运动有关。
我们假设 A 和 B 结构域之间界面上的一个环通过两个α-螺旋在 B 结构域的位置与单体之间的埋藏表面之间发挥重要作用。所提出的模型将酶的催化循环与其结构域运动联系起来,并突出了相邻亚基界面的贡献。此外,在一个别构结合结构域中观察到一个不寻常的有序构象,它与一个特定的 Apicomplexa 插入有关。序列和结构的特殊性解释了该酶通过单磷酸化糖的非典型激活。这些特性的总和使该酶成为药物发现的新兴靶点。