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神经球蛋白和肌红蛋白单晶的极化 X 射线吸收近边结构光谱学。

Polarized X-ray absorption near-edge structure spectroscopy of neuroglobin and myoglobin single crystals.

机构信息

Istituto di Biochimica e Biochimica Clinica, Università Cattolica del Sacro Cuore, L. go F. Vito 1, 00168 Rome, Italy.

出版信息

J Phys Chem B. 2010 Oct 21;114(41):13223-31. doi: 10.1021/jp104395g.

Abstract

Polarized Fe K-edge X-ray absorption near-edge structure (XANES) spectra of murine carbonmonoxy-neuroglobin (NgbCO) single crystals have been collected and compared with a number of derivatives of sperm whale myoglobin (Mb), that is, the nitrosyl (MbNO) and deoxy (Mb) derivatives, the previously reported cyanomet (MbCN) and carbonmonoxy (MbCO) derivatives, and the cryogenic photoproduct of MbCO (Mb·CO). The single crystals under study exhibit a strong XANES angular dichroism which allows the heme geometry of each sample to be analyzed with extremely high accuracy via the full multiple scattering (MS) approach. The results of two alternative methods to undergo the MS analysis have been compared with high resolution X-ray diffraction (XRD) data and with X-ray absorption spectroscopy (XAS) data in solution. As a result of the present analysis, the Fe-heme structure in solution and in the cryo-trapped NgbCO single crystal (which cracks at room temperature) are the same. Accordingly, the residual energy involved in the protein relaxation responsible of crystal cracking at room temperature after CO binding does not reside in the heme pocket. A combined approach (polarized XANES and XRD) is suggested to be applied on the same single crystals of metalloproteins at opportunely equipped synchrotron beamlines.

摘要

已收集并比较了鼠碳氧合神经球蛋白(NgbCO)单晶的极化 Fe K 边 X 射线吸收近边结构(XANES)谱与多种抹香鲸肌红蛋白(Mb)衍生物,即亚硝基(MbNO)和脱氧(Mb)衍生物、先前报道的氰合(MbCN)和碳氧合(MbCO)衍生物,以及 MbCO 的低温光产物(Mb·CO)。研究中的单晶表现出强烈的 XANES 各向异性,这使得可以通过全多重散射(MS)方法极其精确地分析每个样品的血红素几何形状。两种替代方法的 MS 分析结果已与高分辨率 X 射线衍射(XRD)数据和溶液中的 X 射线吸收光谱(XAS)数据进行了比较。由于目前的分析,溶液中和在低温捕获的 NgbCO 单晶(在室温下破裂)中的 Fe-血红素结构相同。因此,在室温下结合 CO 后导致晶体破裂的蛋白质弛豫所涉及的残留能量不在血红素口袋中。建议在配备同步加速器光束线的相同金属蛋白单晶上应用组合方法(极化 XANES 和 XRD)。

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