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嵌入琼脂糖基质中的DNA的酵母人工染色体克隆

YAC cloning of DNA embedded in an agarose matrix.

作者信息

McCormick M K, Antonarakis S E, Hieter P

机构信息

Genetics Group, Los Alamos National Laboratory, NM 87545.

出版信息

Genet Anal Tech Appl. 1990 Sep;7(5):114-8. doi: 10.1016/0735-0651(90)90016-9.

DOI:10.1016/0735-0651(90)90016-9
PMID:2091693
Abstract

Yeast artificial chromosome (YAC) cloning of DNA in agarose is an alternative method to cloning from aqueous solutions. It minimizes any shearing that may result from handling of high molecular weight DNA and can be done with nanogram to microgram amounts of material, which facilitates construction of YACs from sources of DNA other than genomic DNA isolated from cells. The average size of the YACs recovered (200-1000 kb) and efficiency of transformation of ligation products (200-1000 cfu/micrograms) are similar to those reported using aqueous protocols. This method has been used to construct chromosome specific YACs, and it should be possible to apply the technique to the construction of chromosome specific libraries using flow sorted chromosomes as source material, and the cloning of restriction fragments isolated by preparative pulsed field gel electrophoresis.

摘要

在琼脂糖中进行酵母人工染色体(YAC)DNA克隆是从水溶液中克隆的另一种方法。它能将因处理高分子量DNA而可能产生的任何剪切降至最低,并且可以使用纳克至微克量的材料来完成,这便于从细胞分离的基因组DNA以外的DNA来源构建YAC。回收的YAC的平均大小(200 - 1000 kb)和连接产物的转化效率(200 - 1000 cfu/微克)与使用水性方案报道的相似。该方法已用于构建染色体特异性YAC,并且应该可以将该技术应用于使用流式分选染色体作为源材料构建染色体特异性文库,以及克隆通过制备性脉冲场凝胶电泳分离的限制性片段。

相似文献

1
YAC cloning of DNA embedded in an agarose matrix.嵌入琼脂糖基质中的DNA的酵母人工染色体克隆
Genet Anal Tech Appl. 1990 Sep;7(5):114-8. doi: 10.1016/0735-0651(90)90016-9.
2
Construction of human chromosome 21-specific yeast artificial chromosomes.人类21号染色体特异性酵母人工染色体的构建
Proc Natl Acad Sci U S A. 1989 Dec;86(24):9991-5. doi: 10.1073/pnas.86.24.9991.
3
Encapsulation of cells in agarose beads for use in the construction of human DNA libraries as yeast artificial chromosomes (YAC).将细胞封装在琼脂糖珠中,用于构建作为酵母人工染色体(YAC)的人类DNA文库。
Jinrui Idengaku Zasshi. 1990 Jun;35(2):131-43. doi: 10.1007/BF01876458.
4
Construction and characterization of a yeast artificial chromosome library containing seven haploid human genome equivalents.包含七个单倍体人类基因组当量的酵母人工染色体文库的构建与表征。
Proc Natl Acad Sci U S A. 1990 Jun;87(11):4256-60. doi: 10.1073/pnas.87.11.4256.
5
Construction of yeast artificial chromosome libraries with large inserts using fractionation by pulsed-field gel electrophoresis.利用脉冲场凝胶电泳分级分离构建具有大插入片段的酵母人工染色体文库。
Nucleic Acids Res. 1989 May 11;17(9):3425-33. doi: 10.1093/nar/17.9.3425.
6
Rapid method for construction of yeast artificial chromosome human DNA libraries involving the trapping of cells in agarose films.一种涉及将细胞捕获在琼脂糖膜中的酵母人工染色体人类DNA文库构建的快速方法。
FEBS Lett. 1990 Nov 26;275(1-2):77-82. doi: 10.1016/0014-5793(90)81443-r.
7
Low-frequency chimeric yeast artificial chromosome libraries from flow-sorted human chromosomes 16 and 21.来自流式分选的人类16号和21号染色体的低频嵌合酵母人工染色体文库。
Proc Natl Acad Sci U S A. 1993 Feb 1;90(3):1063-7. doi: 10.1073/pnas.90.3.1063.
8
Construction of a human MluI YAC library.
Genomics. 1994 May 1;21(1):58-62. doi: 10.1006/geno.1994.1224.
9
Analysis of isolated YAC clones.分离的酵母人工染色体(YAC)克隆分析
Curr Protoc Mol Biol. 2001 May;Chapter 6:Unit6.10. doi: 10.1002/0471142727.mb0610s20.
10
A procedure for cloning restriction fragments of DNA as single inserts in yeast artificial chromosomes.一种将DNA限制性片段作为单一片段克隆到酵母人工染色体中的方法。
Biochem Int. 1990;20(3):503-10.

引用本文的文献

1
Marked improvement of PAC and BAC cloning is achieved using electroelution of pulsed-field gel-separated partial digests of genomic DNA.通过对基因组DNA的脉冲场凝胶分离的部分消化产物进行电洗脱,显著改善了PAC和BAC克隆。
Nucleic Acids Res. 1997 Oct 1;25(19):3959-61. doi: 10.1093/nar/25.19.3959.
2
Map-based cloning in crop plants: tomato as a model system II. Isolation and characterization of a set of overlapping yeast artificial chromosomes encompassing the jointless locus.作物基于图谱的克隆:以番茄为模式系统 II。一组包含无节位基因座的重叠酵母人工染色体的分离与鉴定。
Mol Gen Genet. 1994 Sep 28;244(6):613-21. doi: 10.1007/BF00282751.