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糖基水解酶家族 30 的整合:一个由两个结构截然不同的群组组成的双结构域 4/7 水解酶家族。

Consolidation of glycosyl hydrolase family 30: a dual domain 4/7 hydrolase family consisting of two structurally distinct groups.

机构信息

University of Maryland, School of Pharmacy, Department of Pharmaceutical Sciences, Baltimore, MD, USA.

出版信息

FEBS Lett. 2010 Nov 5;584(21):4435-41. doi: 10.1016/j.febslet.2010.09.051. Epub 2010 Oct 8.

Abstract

In this work glycosyl hydrolase (GH) family 30 (GH30) is analyzed and shown to consist of its currently classified member sequences as well as several homologous sequence groups currently assigned within family GH5. A large scale amino acid sequence alignment and a phylogenetic tree were generated and GH30 groups and subgroups were designated. A partial rearrangement in the GH30 defining side-associated β-domain contributes to the differentiation of two major groups that contain up to eight subgroups. For this CAZy family of Clan A enzymes the dual domain fold is conserved, suggesting that it may be a requirement for evolved function. This work redefines GH family 30 and serves as a guide for future efforts regarding enzymes classified within this family.

摘要

在这项工作中,分析了糖苷水解酶(GH)家族 30(GH30),并表明它由目前分类的成员序列以及目前分配在 GH5 家族内的几个同源序列群组成。生成了大规模的氨基酸序列比对和系统发育树,并指定了 GH30 组和亚组。GH30 定义的侧相关 β 结构域的局部重排有助于区分包含多达 8 个亚组的两个主要组。对于 A 族的这个 CAZy 酶家族,双结构域折叠是保守的,这表明它可能是进化功能的要求。这项工作重新定义了 GH 家族 30,并为未来在这个家族中分类的酶的研究提供了指导。

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