Huang Guan-Qing, Hua Yu-Wei, Gao Zhan, Huang Hua-Sun
Rubber Research Institute of Chinese Academy of Tropical Agricultural Sciences, Danzhou, China.
Yi Chuan. 2010 Oct;32(10):1071-6. doi: 10.3724/sp.j.1005.2010.01071.
In order to enrich gene encoding region of Hevea brasiliensis, a methylation filtration library was constructed using Escherichia coli McrBC restriction-modification system. The titers of the non-amplified library and the amplified library were 2.6×106 pfu/ml and 9.0×109, respectively. The rate of positive clones was 86.4%. The lengths of inserted DNA sequence ranged from 1 kb to 2.5 kb and the average size of inserts was 1.2 kb. One hundred clones were selected randomly for sequencing, resulting in splicing out of 81 non-redundant sequences, including 6 contigs and 75 singlets. The redundancy was 17.35%. Blast analysis showed that 39.5% of non-redundant sequences were homologous with the Nr database, 14.81% with the EST database, and 32.1% were unknown sequences. Some sequences were related genes for flowering, insect and disease resistance. Therefore, the rubber tree methylation library is helpful for discovery and cloning of functional genes.
为了丰富巴西橡胶树的基因编码区,利用大肠杆菌McrBC限制修饰系统构建了甲基化过滤文库。未扩增文库和扩增文库的滴度分别为2.6×106 pfu/ml和9.0×109。阳性克隆率为86.4%。插入DNA序列的长度范围为1 kb至2.5 kb,插入片段的平均大小为1.2 kb。随机选择100个克隆进行测序,拼接出81个非冗余序列,包括6个重叠群和75个单拷贝序列。冗余度为17.35%。Blast分析表明,39.5%的非冗余序列与Nr数据库同源,14.81%与EST数据库同源,32.1%为未知序列。一些序列是与开花、抗虫和抗病相关的基因。因此,橡胶树甲基化文库有助于功能基因的发现和克隆。