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基于第一性原理预测抗炎昔布类药物的 pK(a)值。

First-principles prediction of the pK(a)s of anti-inflammatory oxicams.

机构信息

ARC Centre of Excellence for Free Radical Chemistry and Biotechnology, Research School of Chemistry, Australian National University, Canberra ACT 0200, Australia.

出版信息

J Phys Chem A. 2010 Nov 11;114(44):11992-2003. doi: 10.1021/jp107890p.

Abstract

The gas- and aqueous-phase acidities of a series of oxicams have been computed by combining M05-2X/6-311+G(3df,2p) gas-phase free energies with solvation free energies from the CPCM-UAKS, COSMO-RS, and SMD solvent models. To facilitate accurate gas-phase calculations, a benchmarking study was further carried out to assess the performance of various density functional theory methods against the high-level composite method G3MP2(+). Oxicams are typically diprotic acids, and several tautomers are possible in each protonation state. The direct thermodynamic cycle and the proton exchange scheme have been employed to compute the microscopic pK(a)s on both solution- and gas-phase equilibrium conformers, and these were combined to yield the macroscopic pK(a) values. Using the direct cycle of pK(a) calculation, the CPCM-UAKS model delivered reasonably accurate results with MAD ~ 1, whereas the SMD and COSMO-RS models' performance was less satisfactory with MAD ~ 3. Comparison with experiment also indicates that direct cycle calculations based on solution conformers generally deliver better accuracy. The proton exchange cycle affords further improvement for all solvent models through systematic error cancellation and therefore provides better reliability for the pK(a) prediction of compounds of these types. The latter approach has been applied to predict the pK(a)s of several recently synthesized oxicam derivatives.

摘要

我们采用 M05-2X/6-311+G(3df,2p)气相自由能与 CPCM-UAKS、COSMO-RS 和 SMD 溶剂模型的溶剂化自由能相结合,计算了一系列氧杂环烷酸的气相和水相酸度。为了便于进行准确的气相计算,我们进一步进行了基准测试研究,以评估各种密度泛函理论方法对高级复合方法 G3MP2(+)的性能。氧杂环烷酸通常是二羧酸,在每个质子化状态下都可能存在几种互变异构体。我们采用直接热力学循环和质子交换方案来计算溶液相和气相平衡构象上的微观 pK(a),并将这些微观 pK(a)组合起来得到宏观 pK(a)值。使用直接的 pK(a)计算循环,CPCM-UAKS 模型的结果具有相当的准确性,平均绝对偏差(MAD)约为 1,而 SMD 和 COSMO-RS 模型的性能则不太令人满意,MAD 约为 3。与实验的比较也表明,基于溶液构象的直接循环计算通常能提供更高的准确性。质子交换循环通过系统误差消除为所有溶剂模型提供了进一步的改进,因此为这些类型化合物的 pK(a)预测提供了更好的可靠性。我们已经应用这种方法来预测几种最近合成的氧杂环烷酸衍生物的 pK(a)。

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