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阴离子胸腺嘧啶的垂直离解能:微水效应。

Vertical detachment energies of anionic thymidine: Microhydration effects.

机构信息

Center for Computational Quantum Chemistry, University of Georgia, Athens, Georgia 30602, USA.

出版信息

J Chem Phys. 2010 Oct 14;133(14):144305. doi: 10.1063/1.3488105.

Abstract

Density functional theory has been employed to investigate microhydration effects on the vertical detachment energy (VDE) of the thymidine anion by considering the various structures of its monohydrates. Structures were located using a random searching procedure. Among 14 distinct structures of the anionic thymidine monohydrate, the low-energy structures, in general, have the water molecule bound to the thymine base unit. The negative charge developed on the thymine moiety increases the strength of the intermolecular hydrogen bonding between the water and base units. The computed VDE values of the thymidine monohydrate anions are predicted to range from 0.67 to 1.60 eV and the lowest-energy structure has a VDE of 1.32 eV. The VDEs of the monohydrates of the thymidine anion, where the N(1)[Single Bond]H hydrogen of thymine has been replaced by a 2(')-deoxyribose ring, are greater by ∼0.30 eV, compared to those of the monohydrates of the thymine anion. The results of the present study are in excellent agreement with the accompanying experimental results of Bowen and co-workers [J. Chem. Phys. 133, 144304 (2010)].

摘要

密度泛函理论被用来研究微水合对胸腺嘧啶阴离子垂直离解能(VDE)的影响,同时考虑了其一水合物的各种结构。通过随机搜索程序确定了结构。在阴离子胸腺嘧啶一水合物的 14 种不同结构中,通常情况下,低能量结构的水分子与胸腺嘧啶碱基单元结合。胸腺嘧啶部分上形成的负电荷增加了水分子和碱基单元之间的分子间氢键的强度。预测胸腺嘧啶单水合物阴离子的 VDE 值范围为 0.67 至 1.60 eV,能量最低的结构的 VDE 为 1.32 eV。与胸腺嘧啶阴离子的单水合物相比,胸腺嘧啶阴离子的单水合物中,胸腺嘧啶的 N(1)[单键]H 氢被 2'(-)脱氧核糖环取代,其 VDE 增加了约 0.30 eV。本研究的结果与 Bowen 及其同事的实验结果[J. Chem. Phys. 133, 144304 (2010)]非常吻合。

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