Department of Chemistry, University of Hawaii at Manoa, Honolulu, Hawaii 96822, United States.
Biochemistry. 2010 Nov 23;49(46):9985-96. doi: 10.1021/bi101023c. Epub 2010 Nov 1.
Biotin synthase (BS) is a member of the "SAM radical" superfamily of enzymes, which catalyze reactions in which the reversible or irreversible oxidation of various substrates is coupled to the reduction of the S-adenosyl-l-methionine (AdoMet) sulfonium to generate methionine and 5'-deoxyadenosine (dAH). Prior studies have demonstrated that these products are modest inhibitors of BS and other members of this enzyme family. In addition, the in vivo catalytic activity of Escherichia coli BS requires expression of 5'-methylthioadenosine/S-adenosyl-l-homocysteine nucleosidase, which hydrolyzes 5'-methylthioadenosine (MTA), S-adenosyl-l-homocysteine (AdoHcy), and dAH. In the present work, we confirm that dAH is a modest inhibitor of BS (K(i) = 20 μM) and show that cooperative binding of dAH with excess methionine results in a 3-fold enhancement of this inhibition. However, with regard to the other substrates of MTA/AdoHcy nucleosidase, we demonstrate that AdoHcy is a potent inhibitor of BS (K(i) ≤ 650 nM) while MTA is not an inhibitor. Inhibition by both dAH and AdoHcy likely accounts for the in vivo requirement for MTA/AdoHcy nucleosidase and may help to explain some of the experimental disparities between various laboratories studying BS. In addition, we examine possible inhibition by other AdoMet-related biomolecules present as common contaminants in commercial AdoMet preparations and/or generated during an assay, as well as by sinefungin, a natural product that is a known inhibitor of several AdoMet-dependent enzymes. Finally, we examine the catalytic activity of BS with highly purified AdoMet in the presence of MTAN to relieve product inhibition and present evidence suggesting that the enzyme is half-site active and capable of undergoing multiple turnovers in vitro.
生物素合酶(BS)是“SAM 自由基”超家族酶的成员,该酶家族催化各种底物的可逆或不可逆氧化与 S-腺苷-L-甲硫氨酸(AdoMet)亚砜的还原偶联,从而生成甲硫氨酸和 5′-脱氧腺苷(dAH)。先前的研究表明,这些产物是 BS 和该酶家族其他成员的适度抑制剂。此外,大肠杆菌 BS 的体内催化活性需要表达 5′-甲基硫代腺苷/S-腺苷-L-同型半胱氨酸核苷酶,该酶水解 5′-甲基硫代腺苷(MTA)、S-腺苷-L-同型半胱氨酸(AdoHcy)和 dAH。在本工作中,我们证实 dAH 是 BS 的适度抑制剂(K(i) = 20 μM),并表明 dAH 与过量甲硫氨酸的协同结合导致这种抑制作用增强 3 倍。然而,对于 MTA/AdoHcy 核苷酶的其他底物,我们证明 AdoHcy 是 BS 的有效抑制剂(K(i) ≤ 650 nM),而 MTA 不是抑制剂。dAH 和 AdoHcy 的抑制作用可能解释了体内对 MTA/AdoHcy 核苷酶的需求,并有助于解释研究 BS 的各个实验室之间存在的一些实验差异。此外,我们还检查了商业 AdoMet 制剂中常见污染物以及测定过程中产生的其他 AdoMet 相关生物分子以及天然产物 sinefungin 可能对酶的抑制作用,sinefungin 是几种 AdoMet 依赖性酶的已知抑制剂。最后,我们在存在 MTAN 的情况下用高度纯化的 AdoMet 检查 BS 的催化活性,以缓解产物抑制,并提出证据表明该酶是半位点活性,并且能够在体外进行多次周转。