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水生索利蒙纳斯菌的提出,以及将黄杆菌属的黄曲霉菌 Zhou 等人 2008 年重新分类为索利蒙纳斯 flava comb. nov.,将奇异单胞菌属的变色单胞菌 Friedrich 和 Lipski 2008 年重新分类为索利蒙纳斯 variicoloris comb. nov.,并对索利蒙纳斯属及其模式种土壤索利蒙纳斯的描述进行了修正。

Proposal of Solimonas aquatica sp. nov., reclassification of Sinobacter flavus Zhou et al. 2008 as Solimonas flava comb. nov. and Singularimonas variicoloris Friedrich and Lipski 2008 as Solimonas variicoloris comb. nov. and emended descriptions of the genus Solimonas and its type species Solimonas soli.

机构信息

Department of Marine Biotechnology, National Kaohsiung Marine University, No. 142, Hai-Chuan Rd, Nan-Tzu, Kaohsiung City 811, Taiwan.

Laboratory of Microbiology, Department of Seafood Science, National Kaohsiung Marine University, No. 142, Hai-Chuan Rd, Nan-Tzu, Kaohsiung City 811, Taiwan.

出版信息

Int J Syst Evol Microbiol. 2011 Sep;61(Pt 9):2284-2291. doi: 10.1099/ijs.0.023010-0. Epub 2010 Oct 22.

DOI:10.1099/ijs.0.023010-0
PMID:20971835
Abstract

A bacterial strain designated NAA16(T) was isolated from a freshwater spring in Taiwan and was characterized using a polyphasic taxonomic approach. Strain NAA16(T) was aerobic, Gram-staining-negative, rod-shaped, non-spore-forming and motile by means of a single polar flagellum. Growth occurred at 20-40 °C (optimum, 25 °C), at pH 7.0-8.0 (optimum, pH 7.5) and with up to 1 % NaCl (optimum, 0.5 %). Phylogenetic analyses based on 16S rRNA gene sequences showed that the closest relatives of strain NAA16(T) were Singularimonas variicoloris MN28(T), Sinobacter flavus CW-KD 4(T) and Solimonas soli DCY12(T), with respective sequence similarities of 96.7, 96.6 and 96.2 %. Phylogenetic trees reconstructed from 16S rRNA gene or rpoB sequences (encoding the β-subunit of the RNA polymerase) revealed that the novel strain NAA16(T) and these three closest relatives formed an independent phylogenetic clade within the Gammaproteobacteria. Strain NAA16(T) contained C₁₆:₀, C₁₈:₁ω7c and summed feature 3 (C₁₆:₁ω7c and/or C₁₆:₁ω6c) as predominant fatty acids and possessed phosphatidylethanolamine, phosphatidylglycerol, diphosphatidylglycerol and an uncharacterized aminophospholipid as dominant polar lipids. The major isoprenoid quinone was Q-8. The DNA G+C content of strain NAA16(T) was 66.2 mol%. The taxonomic relationship of strain NAA16(T), Singularimonas variicoloris DSM 15731(T), Sinobacter flavus DSM 18980(T) and Solimonas soli LMG 24014(T) was clarified by means of a direct experimental comparison. Based on phenotypic, chemotaxonomic and phylogenetic data, the descriptions of the genus Solimonas and its type species Solimonas soli are emended. Members of the genus are Gram-negative, oxidase- and catalase-positive, aerobic or facultatively anaerobic and chemo-organotrophic. Chemotaxonomically, members of the genus Solimonas possess Q-8 as the major respiratory quinone, C₁₆:₀ and C₁₈:₁ω7c as predominant fatty acids and phosphatidylethanolamine, phosphatidylglycerol, diphosphatidylglycerol and an uncharacterized aminophospholipid as dominant polar lipids; the DNA G+C content is 64.9-68.4 mol%. Phylogenetic evidence, supported by chemotaxonomic and phenotypic data, allowed us to assign strain NAA16(T) to the genus Solimonas within the novel species Solimonas aquatica sp. nov. (type strain NAA16(T)  = BCRC 17835(T)  = LMG 24500(T)). The reclassification of Sinobacter flavus as Solimonas flava comb. nov. (type strain CW-KD 4(T)  = DSM 18980(T)  = KCTC 12881(T)  = CCTCC AB 206145(T)) and Singularimonas variicoloris as Solimonas variicoloris comb. nov. (type strain MN28(T)  = DSM 15731(T)  = LMG 22844(T)) is also proposed.

摘要

一株名为 NAA16(T) 的细菌菌株从台湾的一个温泉中分离出来,并通过多相分类方法进行了特征描述。菌株 NAA16(T) 为需氧、革兰氏阴性、杆状、非孢子形成且通过单一极鞭毛运动。生长发生在 20-40°C(最佳温度为 25°C)、pH 7.0-8.0(最佳 pH 值为 7.5)和高达 1%NaCl(最佳为 0.5%NaCl)的条件下。基于 16S rRNA 基因序列的系统发育分析表明,菌株 NAA16(T) 的最接近的亲缘种是 Singularimonas variicoloris MN28(T)、Sinobacter flavus CW-KD 4(T) 和 Solimonas soli DCY12(T),它们的序列相似度分别为 96.7%、96.6%和 96.2%。从 16S rRNA 基因或 rpoB 序列(编码 RNA 聚合酶的β亚基)重建的系统发育树显示,新型菌株 NAA16(T) 和这三个最接近的亲缘种在γ变形菌中形成了一个独立的系统发育分支。菌株 NAA16(T) 含有 C16:0、C18:1ω7c 和总和特征 3(C16:1ω7c 和/或 C16:1ω6c)作为主要脂肪酸,并具有磷脂酰乙醇胺、磷脂酰甘油、双磷脂酰甘油和一种未鉴定的氨基磷脂作为主要极性脂。主要的类异戊二烯醌是 Q-8。菌株 NAA16(T) 的 DNA G+C 含量为 66.2mol%。通过直接实验比较,澄清了菌株 NAA16(T)、Singularimonas variicoloris DSM 15731(T)、Sinobacter flavus DSM 18980(T) 和 Solimonas soli LMG 24014(T) 之间的分类关系。基于表型、化学分类学和系统发育数据,对 Solimonas 属及其模式种 Solimonas soli 的描述进行了修正。该属的成员为革兰氏阴性、氧化酶和过氧化氢酶阳性、需氧或兼性厌氧、化学有机营养型。化学分类学上,Solimonas 属的成员具有 Q-8 作为主要呼吸醌,C16:0 和 C18:1ω7c 作为主要脂肪酸,磷脂酰乙醇胺、磷脂酰甘油、双磷脂酰甘油和一种未鉴定的氨基磷脂作为主要极性脂;DNA G+C 含量为 64.9-68.4mol%。系统发育证据,辅以化学分类学和表型数据,使我们能够将菌株 NAA16(T) 分配到 Solimonas 属中的新型种 Solimonas aquatica sp. nov.(模式株 NAA16(T) =BCRC 17835(T) =LMG 24500(T))中。Sinobacter flavus 作为 Solimonas flava comb. nov. 的重新分类(模式株 CW-KD 4(T) =DSM 18980(T) =KCTC 12881(T) =CCTCC AB 206145(T))和 Singularimonas variicoloris 作为 Solimonas variicoloris comb. nov. 的重新分类(模式株 MN28(T) =DSM 15731(T) =LMG 22844(T))也被提出。

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