Department of Marine Biotechnology, National Kaohsiung Marine University, No. 142, Hai-Chuan Rd, Nan-Tzu, Kaohsiung City 811, Taiwan.
Laboratory of Microbiology, Department of Seafood Science, National Kaohsiung Marine University, No. 142, Hai-Chuan Rd, Nan-Tzu, Kaohsiung City 811, Taiwan.
Int J Syst Evol Microbiol. 2011 Sep;61(Pt 9):2284-2291. doi: 10.1099/ijs.0.023010-0. Epub 2010 Oct 22.
A bacterial strain designated NAA16(T) was isolated from a freshwater spring in Taiwan and was characterized using a polyphasic taxonomic approach. Strain NAA16(T) was aerobic, Gram-staining-negative, rod-shaped, non-spore-forming and motile by means of a single polar flagellum. Growth occurred at 20-40 °C (optimum, 25 °C), at pH 7.0-8.0 (optimum, pH 7.5) and with up to 1 % NaCl (optimum, 0.5 %). Phylogenetic analyses based on 16S rRNA gene sequences showed that the closest relatives of strain NAA16(T) were Singularimonas variicoloris MN28(T), Sinobacter flavus CW-KD 4(T) and Solimonas soli DCY12(T), with respective sequence similarities of 96.7, 96.6 and 96.2 %. Phylogenetic trees reconstructed from 16S rRNA gene or rpoB sequences (encoding the β-subunit of the RNA polymerase) revealed that the novel strain NAA16(T) and these three closest relatives formed an independent phylogenetic clade within the Gammaproteobacteria. Strain NAA16(T) contained C₁₆:₀, C₁₈:₁ω7c and summed feature 3 (C₁₆:₁ω7c and/or C₁₆:₁ω6c) as predominant fatty acids and possessed phosphatidylethanolamine, phosphatidylglycerol, diphosphatidylglycerol and an uncharacterized aminophospholipid as dominant polar lipids. The major isoprenoid quinone was Q-8. The DNA G+C content of strain NAA16(T) was 66.2 mol%. The taxonomic relationship of strain NAA16(T), Singularimonas variicoloris DSM 15731(T), Sinobacter flavus DSM 18980(T) and Solimonas soli LMG 24014(T) was clarified by means of a direct experimental comparison. Based on phenotypic, chemotaxonomic and phylogenetic data, the descriptions of the genus Solimonas and its type species Solimonas soli are emended. Members of the genus are Gram-negative, oxidase- and catalase-positive, aerobic or facultatively anaerobic and chemo-organotrophic. Chemotaxonomically, members of the genus Solimonas possess Q-8 as the major respiratory quinone, C₁₆:₀ and C₁₈:₁ω7c as predominant fatty acids and phosphatidylethanolamine, phosphatidylglycerol, diphosphatidylglycerol and an uncharacterized aminophospholipid as dominant polar lipids; the DNA G+C content is 64.9-68.4 mol%. Phylogenetic evidence, supported by chemotaxonomic and phenotypic data, allowed us to assign strain NAA16(T) to the genus Solimonas within the novel species Solimonas aquatica sp. nov. (type strain NAA16(T) = BCRC 17835(T) = LMG 24500(T)). The reclassification of Sinobacter flavus as Solimonas flava comb. nov. (type strain CW-KD 4(T) = DSM 18980(T) = KCTC 12881(T) = CCTCC AB 206145(T)) and Singularimonas variicoloris as Solimonas variicoloris comb. nov. (type strain MN28(T) = DSM 15731(T) = LMG 22844(T)) is also proposed.
一株名为 NAA16(T) 的细菌菌株从台湾的一个温泉中分离出来,并通过多相分类方法进行了特征描述。菌株 NAA16(T) 为需氧、革兰氏阴性、杆状、非孢子形成且通过单一极鞭毛运动。生长发生在 20-40°C(最佳温度为 25°C)、pH 7.0-8.0(最佳 pH 值为 7.5)和高达 1%NaCl(最佳为 0.5%NaCl)的条件下。基于 16S rRNA 基因序列的系统发育分析表明,菌株 NAA16(T) 的最接近的亲缘种是 Singularimonas variicoloris MN28(T)、Sinobacter flavus CW-KD 4(T) 和 Solimonas soli DCY12(T),它们的序列相似度分别为 96.7%、96.6%和 96.2%。从 16S rRNA 基因或 rpoB 序列(编码 RNA 聚合酶的β亚基)重建的系统发育树显示,新型菌株 NAA16(T) 和这三个最接近的亲缘种在γ变形菌中形成了一个独立的系统发育分支。菌株 NAA16(T) 含有 C16:0、C18:1ω7c 和总和特征 3(C16:1ω7c 和/或 C16:1ω6c)作为主要脂肪酸,并具有磷脂酰乙醇胺、磷脂酰甘油、双磷脂酰甘油和一种未鉴定的氨基磷脂作为主要极性脂。主要的类异戊二烯醌是 Q-8。菌株 NAA16(T) 的 DNA G+C 含量为 66.2mol%。通过直接实验比较,澄清了菌株 NAA16(T)、Singularimonas variicoloris DSM 15731(T)、Sinobacter flavus DSM 18980(T) 和 Solimonas soli LMG 24014(T) 之间的分类关系。基于表型、化学分类学和系统发育数据,对 Solimonas 属及其模式种 Solimonas soli 的描述进行了修正。该属的成员为革兰氏阴性、氧化酶和过氧化氢酶阳性、需氧或兼性厌氧、化学有机营养型。化学分类学上,Solimonas 属的成员具有 Q-8 作为主要呼吸醌,C16:0 和 C18:1ω7c 作为主要脂肪酸,磷脂酰乙醇胺、磷脂酰甘油、双磷脂酰甘油和一种未鉴定的氨基磷脂作为主要极性脂;DNA G+C 含量为 64.9-68.4mol%。系统发育证据,辅以化学分类学和表型数据,使我们能够将菌株 NAA16(T) 分配到 Solimonas 属中的新型种 Solimonas aquatica sp. nov.(模式株 NAA16(T) =BCRC 17835(T) =LMG 24500(T))中。Sinobacter flavus 作为 Solimonas flava comb. nov. 的重新分类(模式株 CW-KD 4(T) =DSM 18980(T) =KCTC 12881(T) =CCTCC AB 206145(T))和 Singularimonas variicoloris 作为 Solimonas variicoloris comb. nov. 的重新分类(模式株 MN28(T) =DSM 15731(T) =LMG 22844(T))也被提出。