Dipartimento di Scienze Biochimiche A. Rossi Fanelli, Università La Sapienza, Piazzale Aldo Moro 5, 00185 Roma, Italy.
J Phys Chem B. 2010 Nov 25;114(46):15018-28. doi: 10.1021/jp106282w. Epub 2010 Oct 28.
Two indicators of the hydropathicity of small solutes are introduced and tested by molecular dynamics simulations. These indicators are defined as probabilities of the orientation of water molecules' dipoles and hydrogen bond vectors, conditional on a generalized distance from the solute suitable for arbitrarily shaped molecules. Using conditional probabilities, it is possible to distinguish features of the distributions in close proximity of the solute. These regions contain the most significant information on the hydration structure but cannot be adequately represented by using, as is usually done, joint distance-angle probability densities. Our calculations show that using our indicators a relative hydropathicity scale for the interesting test set of the quaternary ammonium cations can be roughly determined.
引入并通过分子动力学模拟测试了两个描述小分子疏水性的指标。这些指标定义为水分子偶极子和氢键向量在广义距溶质距离条件下的取向概率,适用于任意形状的分子。使用条件概率,可以区分溶质附近分布的特征。这些区域包含关于水合结构的最有意义的信息,但不能像通常那样使用联合距离-角度概率密度来充分表示。我们的计算表明,使用我们的指标可以大致确定有趣的季铵阳离子测试集的相对疏水性尺度。