一氧化碳利用产乙酸菌，迟缓真杆菌 KIST612 的全基因组序列。
Complete genome sequence of a carbon monoxide-utilizing acetogen, Eubacterium limosum KIST612.
机构信息
College of Life Sciences and Biotechnology, Korea University, Anam-Dong, Seongbuk-Gu, Seoul 136-713, South Korea.
出版信息
J Bacteriol. 2011 Jan;193(1):307-8. doi: 10.1128/JB.01217-10. Epub 2010 Oct 29.
Abstract
Eubacterium limosum KIST612 is an anaerobic acetogenic bacterium that uses CO as the sole carbon/energy source and produces acetate, butyrate, and ethanol. To evaluate its potential as a syngas microbial catalyst, we have sequenced the complete 4.3-Mb genome of E. limosum KIST612.
摘要
迟缓真杆菌 KIST612 是一种厌氧产乙酸菌，它以 CO 作为唯一的碳/能源来源，产生乙酸盐、丁酸盐和乙醇。为了评估其作为合成气微生物催化剂的潜力，我们对迟缓真杆菌 KIST612 的完整 4.3-Mb 基因组进行了测序。
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本文引用的文献
1
Genomic analysis of carbon monoxide utilization and butanol production by Clostridium carboxidivorans strain P7.
PLoS One. 2010 Sep 27;5(9):e13033. doi: 10.1371/journal.pone.0013033.
2
Clostridium ljungdahlii represents a microbial production platform based on syngas.
Proc Natl Acad Sci U S A. 2010 Jul 20;107(29):13087-92. doi: 10.1073/pnas.1004716107. Epub 2010 Jul 2.
3
Production of biofuels from synthesis gas using microbial catalysts.
Adv Appl Microbiol. 2010;70:57-92. doi: 10.1016/S0065-2164(10)70002-2. Epub 2010 Mar 6.
4
Prodigal: prokaryotic gene recognition and translation initiation site identification.
BMC Bioinformatics. 2010 Mar 8;11:119. doi: 10.1186/1471-2105-11-119.
5
ABySS: a parallel assembler for short read sequence data.
Genome Res. 2009 Jun;19(6):1117-23. doi: 10.1101/gr.089532.108. Epub 2009 Feb 27.
6
The complete genome sequence of Moorella thermoacetica (f. Clostridium thermoaceticum).
Environ Microbiol. 2008 Oct;10(10):2550-73. doi: 10.1111/j.1462-2920.2008.01679.x. Epub 2008 Jun 9.
7
The RAST Server: rapid annotations using subsystems technology.
BMC Genomics. 2008 Feb 8;9:75. doi: 10.1186/1471-2164-9-75.
8
Use of an industrial grade medium and medium enhancing effects on high cell density CO fermentation by Eubacterium limosum KIST612.
Biotechnol Lett. 2007 Aug;29(8):1183-7. doi: 10.1007/s10529-007-9382-x. Epub 2007 May 15.
9
RNAmmer: consistent and rapid annotation of ribosomal RNA genes.
Nucleic Acids Res. 2007;35(9):3100-8. doi: 10.1093/nar/gkm160. Epub 2007 Apr 22.
10
Microbiology of synthesis gas fermentation for biofuel production.
Curr Opin Biotechnol. 2007 Jun;18(3):200-6. doi: 10.1016/j.copbio.2007.03.008. Epub 2007 Mar 30.
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