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初步晶体学研究证实,古细菌DNA结合及色氨酸感应调节蛋白TrpY是一种二聚体。

Preliminary crystallography confirms that the archaeal DNA-binding and tryptophan-sensing regulator TrpY is a dimer.

作者信息

Cafasso Jacquelyn, Manjasetty Babu A, Karr Elizabeth A, Sandman Kathleen, Chance Mark R, Reeve John N

机构信息

United States Department of Energy Summer Undergraduate Laboratory Intern (SULI), College of Agriculture and Life Sciences, Cornell University, Ithaca, NY 14853, USA.

出版信息

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2010 Nov 1;66(Pt 11):1493-5. doi: 10.1107/S1744309110036031. Epub 2010 Oct 28.

Abstract

TrpY regulates the transcription of the metabolically expensive tryptophan-biosynthetic operon in the thermophilic archaeon Methanothermobacter thermautotrophicus. TrpY was crystallized using the hanging-drop method with ammonium sulfate as the precipitant. The crystals belonged to the tetragonal space group P4(3)2(1)2 or P4(1)2(1)2, with unit-cell parameters a = b = 87, c = 147 Å, and diffracted to 2.9 Å resolution. The possible packing of molecules within the cell based on the values of the Matthews coefficient (V(M)) and analysis of the self-rotation function are consistent with the asymmetric unit being a dimer. Determining the structure of TrpY in detail will provide insight into the mechanisms of DNA binding, tryptophan sensing and transcription regulation at high temperature by this novel archaeal protein.

摘要

色氨酸Y调控嗜热古菌嗜热自养甲烷杆菌中代谢成本高昂的色氨酸生物合成操纵子的转录。使用硫酸铵作为沉淀剂,通过悬滴法使色氨酸Y结晶。晶体属于四方晶系空间群P4(3)2(1)2或P4(1)2(1)2,晶胞参数a = b = 87,c = 147 Å,衍射分辨率达到2.9 Å。基于马修斯系数(V(M))的值以及对自旋转函数的分析,细胞内分子的可能堆积情况与不对称单元为二聚体一致。详细确定色氨酸Y的结构将有助于深入了解这种新型古菌蛋白在高温下的DNA结合、色氨酸感应和转录调控机制。

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Evolution of bacterial trp operons and their regulation.细菌色氨酸操纵子的进化及其调控。
Curr Opin Microbiol. 2008 Apr;11(2):78-86. doi: 10.1016/j.mib.2008.02.005.
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Solvent content of protein crystals.蛋白质晶体的溶剂含量。
J Mol Biol. 1968 Apr 28;33(2):491-7. doi: 10.1016/0022-2836(68)90205-2.

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