Department of Biochemistry, University of Alberta, Edmonton, Canada.
RNA Biol. 2010 Nov-Dec;7(6):812-9. doi: 10.4161/rna.7.6.13688. Epub 2010 Nov 1.
The conjugative transfer of F-like plasmids between bacteria is regulated by the plasmid-encoded RNA chaperone, FinO, which facilitates sense - antisense RNA interactions to regulate plasmid gene expression. FinO was thought to adopt a unique structure, however many putative homologs have been identified in microbial genomes and are considered members of the FinO_conjugation_repressor superfamily. We were interested in determining whether other members were also able to bind RNA and promote duplex formation, suggesting that this motif does indeed identify a putative RNA chaperone. We determined the crystal structure of the N. meningitidis MC58 protein NMB1681. It revealed striking similarity to FinO, with a conserved fold and a large, positively charged surface that could function in RNA interactions. Using assays developed to study FinO-FinP sRNA interactions, NMB1681, like FinO, bound tightly to FinP RNA stem-loops with short 5' and 3' single-stranded tails but not to ssRNA. It also was able to catalyze strand exchange between an RNA duplex and a complementary single-strand, and facilitated duplexing between complementary RNA hairpins. Finally, NMB1681 was able to rescue a finO deficiency and repress F plasmid conjugation. This study strongly suggests that NMB1681 is a FinO-like RNA chaperone that likely regulates gene expression through RNA-based mechanisms in N. meningitidis.
细菌之间 F 类质粒的共轭转移受质粒编码的 RNA 伴侣 FinO 调节,它促进了 sense-antisense RNA 相互作用,以调节质粒基因表达。FinO 被认为采用独特的结构,然而,许多微生物基因组中已鉴定出许多假定的同源物,被认为是 FinO_conjugation_repressor 超家族的成员。我们有兴趣确定其他成员是否也能够结合 RNA 并促进双链形成,这表明该基序确实可以识别潜在的 RNA 伴侣。我们测定了脑膜炎奈瑟氏菌 MC58 蛋白 NMB1681 的晶体结构。它与 FinO 惊人地相似,具有保守的折叠和带正电荷的大表面,可用于 RNA 相互作用。使用研究 FinO-FinP sRNA 相互作用开发的测定法,NMB1681 与 FinO 一样,可与 FinP RNA 茎环紧密结合,带有短的 5' 和 3' 单链尾巴,但不能与 ssRNA 结合。它还能够催化 RNA 双链体与互补单链之间的链交换,并促进互补 RNA 发夹之间的双链形成。最后,NMB1681 能够挽救 finO 缺陷并抑制 F 质粒的共轭。这项研究强烈表明,NMB1681 是一种类似 FinO 的 RNA 伴侣,它可能通过 RNA 机制在脑膜炎奈瑟氏菌中调节基因表达。