扩散张量磁共振成像计算方法和软件工具综述。
A review of diffusion tensor magnetic resonance imaging computational methods and software tools.
机构信息
Department of Diagnostic and Interventional Imaging, University of Texas Health Science Center at Houston, TX 77030, USA.
出版信息
Comput Biol Med. 2011 Dec;41(12):1062-72. doi: 10.1016/j.compbiomed.2010.10.008. Epub 2010 Nov 18.
Abstract
In this work we provide an up-to-date short review of computational magnetic resonance imaging (MRI) and software tools that are widely used to process and analyze diffusion-weighted MRI data. A review of different methods used to acquire, model and analyze diffusion-weighted imaging data (DWI) is first provided with focus on diffusion tensor imaging (DTI). The major preprocessing, processing and post-processing procedures applied to DTI data are discussed. A list of freely available software packages to analyze diffusion MRI data is also provided.
摘要
在这项工作中，我们提供了一个最新的计算磁共振成像（MRI）的简短综述，以及广泛用于处理和分析扩散加权 MRI 数据的软件工具。首先，我们回顾了用于获取、建模和分析扩散加权成像数据（DWI）的不同方法，重点介绍了扩散张量成像（DTI）。讨论了应用于 DTI 数据的主要预处理、处理和后处理步骤。还提供了一个可用于分析扩散 MRI 数据的免费软件包列表。
相似文献
1
A review of diffusion tensor magnetic resonance imaging computational methods and software tools.
Comput Biol Med. 2011 Dec;41(12):1062-72. doi: 10.1016/j.compbiomed.2010.10.008. Epub 2010 Nov 18.
2
A computational framework to quantify tissue microstructural integrity using conventional MRI macrostructural volumetry.
Comput Biol Med. 2011 Dec;41(12):1073-81. doi: 10.1016/j.compbiomed.2010.10.009. Epub 2010 Dec 4.
3
Detecting structure in diffusion tensor MR images.
Med Image Comput Comput Assist Interv. 2011;14(Pt 2):90-7. doi: 10.1007/978-3-642-23629-7_12.
4
Magnetic resonance imaging diffusion tensor tractography: evaluation of anatomic accuracy of different fiber tracking software packages.
World Neurosurg. 2014 Jan;81(1):144-50. doi: 10.1016/j.wneu.2013.01.004. Epub 2013 Jan 4.
5
Software Toolbox for Low-Frequency Conductivity and Current Density Imaging Using MRI.
IEEE Trans Biomed Eng. 2017 Nov;64(11):2505-2514. doi: 10.1109/TBME.2017.2732502.
6
Diffusion tensor imaging (DTI)-based white matter mapping in brain research: a review.
J Mol Neurosci. 2008;34(1):51-61. doi: 10.1007/s12031-007-0029-0.
7
Optimal real-time estimation in diffusion tensor imaging.
Magn Reson Imaging. 2012 May;30(4):506-17. doi: 10.1016/j.mri.2011.12.001. Epub 2012 Feb 2.
8
Estimation of diffusion properties in three-way fiber crossings without overfitting.
Phys Med Biol. 2015 Dec 7;60(23):9123-44. doi: 10.1088/0031-9155/60/23/9123. Epub 2015 Nov 12.
9
DR-TAMAS: Diffeomorphic Registration for Tensor Accurate Alignment of Anatomical Structures.
Neuroimage. 2016 May 15;132:439-454. doi: 10.1016/j.neuroimage.2016.02.066. Epub 2016 Feb 28.
10
Population based MRI and DTI templates of the adult ferret brain and tools for voxelwise analysis.
Neuroimage. 2017 May 15;152:575-589. doi: 10.1016/j.neuroimage.2017.03.009. Epub 2017 Mar 16.
引用本文的文献
1
Can Pain Neuroscience Education Combined with Cognition-Targeted Exercise Therapy Change White Matter Structure in People with Chronic Spinal Pain? A Randomized Controlled Trial.
J Clin Med. 2025 Jan 28;14(3):867. doi: 10.3390/jcm14030867.
2
Magnetic Resonance Imaging Biomarkers of Muscle.
Tomography. 2024 Sep 2;10(9):1411-1438. doi: 10.3390/tomography10090106.
3
The integrity of the corticospinal tract and corpus callosum, and the risk of ALS: univariable and multivariable Mendelian randomization.
Sci Rep. 2024 Jul 26;14(1):17216. doi: 10.1038/s41598-024-68374-y.
4
Bayesian tensor-on-tensor regression with efficient computation.
Stat Interface. 2024;17(2):199-217. doi: 10.4310/23-sii786. Epub 2024 Feb 1.
5
Targeting white matter neuroprotection as a relapse prevention strategy for treatment of cocaine use disorder: Design of a mechanism-focused randomized clinical trial.
Contemp Clin Trials. 2021 Dec;111:106603. doi: 10.1016/j.cct.2021.106603. Epub 2021 Oct 22.
6
The role of diffusion tensor imaging in idiopathic sensorineural hearing loss: is it significant?
Pol J Radiol. 2021 Aug 9;86:e474-e480. doi: 10.5114/pjr.2021.108372. eCollection 2021.
7
Quantification of DTI in the Pediatric Spinal Cord: Application to Clinical Evaluation in a Healthy Patient Population.
AJNR Am J Neuroradiol. 2019 Jul;40(7):1236-1241. doi: 10.3174/ajnr.A6104. Epub 2019 Jun 13.
8
Regional differences in white matter integrity in stimulant use disorders: A meta-analysis of diffusion tensor imaging studies.
Drug Alcohol Depend. 2019 Aug 1;201:29-37. doi: 10.1016/j.drugalcdep.2019.03.023. Epub 2019 May 29.
9
Assessment of Glioblastoma Response in the Era of Bevacizumab: Longstanding and Emergent Challenges in the Imaging Evaluation of Pseudoresponse.
Front Neurol. 2019 May 7;10:460. doi: 10.3389/fneur.2019.00460. eCollection 2019.
10
Comparison of probabilistic tractography and tract-based spatial statistics for assessing optic radiation damage in patients with autoimmune inflammatory disorders of the central nervous system.
Neuroimage Clin. 2018 May 8;19:538-550. doi: 10.1016/j.nicl.2018.05.004. eCollection 2018.
本文引用的文献
1
Diffusion tensor-based regional gray matter tissue segmentation using the international consortium for brain mapping atlases.
Hum Brain Mapp. 2011 Jan;32(1):107-17. doi: 10.1002/hbm.21004.
2
Human brain atlas-based volumetry and relaxometry: application to healthy development and natural aging.
Magn Reson Med. 2010 Nov;64(5):1382-9. doi: 10.1002/mrm.22515. Epub 2010 Aug 25.
3
MRI quantification of non-Gaussian water diffusion by kurtosis analysis.
NMR Biomed. 2010 Aug;23(7):698-710. doi: 10.1002/nbm.1518.
4
Feasibility of prefronto-caudate pathway tractography using high resolution diffusion tensor tractography data at 3T.
J Neurosci Methods. 2010 Aug 30;191(2):249-54. doi: 10.1016/j.jneumeth.2010.06.026. Epub 2010 Jun 30.
5
The direct tensor solution and higher-order acquisition schemes for generalized diffusion tensor imaging.
J Magn Reson. 2010 Sep;206(1):9-19. doi: 10.1016/j.jmr.2010.05.016. Epub 2010 May 26.
6
Atlas-guided tract reconstruction for automated and comprehensive examination of the white matter anatomy.
Neuroimage. 2010 Oct 1;52(4):1289-301. doi: 10.1016/j.neuroimage.2010.05.049. Epub 2010 May 24.
7
Voxel-based analysis of the diffusion tensor.
Neuroradiology. 2010 Aug;52(8):699-710. doi: 10.1007/s00234-010-0716-3. Epub 2010 May 14.
8
Atlas-based analysis of neurodevelopment from infancy to adulthood using diffusion tensor imaging and applications for automated abnormality detection.
Neuroimage. 2010 Aug 15;52(2):415-28. doi: 10.1016/j.neuroimage.2010.04.238. Epub 2010 Apr 24.
9
Resolution of Crossing Fibers with Constrained Compressed Sensing using Traditional Diffusion Tensor MRI.
Proc SPIE Int Soc Opt Eng. 2010;7623:76231H. doi: 10.1117/12.844171.
10
Diffusion tensor imaging in a human PET/MR hybrid system.
Invest Radiol. 2010 May;45(5):270-4. doi: 10.1097/RLI.0b013e3181dc3671.
Zotero 插件