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肺炎克雷伯氏菌中的亚碲酸盐抗性蛋白 TerD 的 NMR 结构和钙结合特性。

NMR structure and calcium-binding properties of the tellurite resistance protein TerD from Klebsiella pneumoniae.

机构信息

Institute of Biomedical Sciences, Academia Sinica, 128 Section 2, Academia Road, Nankang, Taipei 115, Taiwan, ROC.

出版信息

J Mol Biol. 2011 Feb 4;405(5):1188-201. doi: 10.1016/j.jmb.2010.11.041. Epub 2010 Nov 26.

DOI:10.1016/j.jmb.2010.11.041
PMID:21112337
Abstract

The tellurium oxyanion TeO(3)(2-) has been used in the treatment of infectious diseases caused by mycobacteria. However, many pathogenic bacteria show tellurite resistance. Several tellurite resistance genes have been identified, and these genes mediate responses to diverse extracellular stimuli, but the mechanisms underlying their functions are unknown. To shed light on the function of KP-TerD, a 20.5 -kDa tellurite resistance protein from a plasmid of Klebsiella pneumoniae, we have determined its three-dimensional structure in solution using NMR spectroscopy. KP-TerD contains a β-sandwich formed by two five-stranded β-sheets and six short helices. The structure exhibits two negative clusters in loop regions on the top of the sandwich, suggesting that KP-TerD may bind metal ions. Indeed, thermal denaturation experiments monitored by circular dichroism and NMR studies reveal that KP-TerD binds Ca(2+). Inductively coupled plasma-optical emission spectroscopy shows that the binding ratio of KP-TerD to Ca(2+) is 1:2. EDTA (ethylenediaminetetraacetic acid) titrations of Ca(2+)-saturated KP-TerD monitored by one-dimensional NMR yield estimated dissociation constants of 18  and 200 nM for the two Ca(2+)-binding sites of KP-TerD. NMR structures incorporating two Ca(2+) ions define a novel bipartite Ca(2)(+)-binding motif that is predicted to be highly conserved in TerD proteins. Moreover, these Ca(2+)-binding sites are also predicted to be present in two additional tellurite resistance proteins, TerE and TerZ. These results suggest that some form of Ca(2+) signaling plays a crucial role in tellurite resistance and in other responses of bacteria to multiple external stimuli that depend on the Ter genes.

摘要

碲氧阴离子 TeO(3)(2-) 已被用于治疗由分枝杆菌引起的传染病。然而,许多致病性细菌表现出亚碲酸盐抗性。已经鉴定出几个亚碲酸盐抗性基因,这些基因介导对不同细胞外刺激的反应,但它们功能的机制尚不清楚。为了阐明来自肺炎克雷伯氏菌质粒的 20.5 kDa 亚碲酸盐抗性蛋白 KP-TerD 的功能,我们使用 NMR 光谱法在溶液中确定了其三维结构。KP-TerD 包含由两个五链β-折叠和六个短螺旋组成的β-夹心。结构在夹心顶部的环区显示出两个负簇,表明 KP-TerD 可能结合金属离子。事实上,圆二色性和 NMR 研究监测的热变性实验表明,KP-TerD 结合 Ca(2+)。电感耦合等离子体-原子发射光谱显示 KP-TerD 与 Ca(2+) 的结合比为 1:2。通过一维 NMR 对 Ca(2+) 饱和的 KP-TerD 进行 EDTA(乙二胺四乙酸)滴定,得出 KP-TerD 对两个 Ca(2+) 结合位点的估计解离常数分别为 18 和 200 nM。包含两个 Ca(2+) 离子的 NMR 结构定义了一种新的二部分 Ca(2)(+)-结合基序,预计在 TerD 蛋白中高度保守。此外,还预测这两个 Ca(2+) 结合位点也存在于另外两个亚碲酸盐抗性蛋白 TerE 和 TerZ 中。这些结果表明,某种形式的 Ca(2+) 信号在亚碲酸盐抗性和其他依赖 Ter 基因的细菌对多种外部刺激的反应中起着至关重要的作用。

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