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通过实验和理论电荷密度分析研究 Cl···Cl 分子间相互作用的本质:极面变平效应与几何形状的关系。

Nature of Cl···Cl intermolecular interactions via experimental and theoretical charge density analysis: correlation of polar flattening effects with geometry.

机构信息

Solid State and Structural Chemistry Unit, Indian Institute of Science, Bangalore-560012, India.

出版信息

J Phys Chem A. 2010 Dec 30;114(51):13434-41. doi: 10.1021/jp1100413. Epub 2010 Dec 8.

Abstract

The experimental charge density distribution in three compounds, 2-chloro-3-quinolinyl methanol, 2-chloro-3-hydroxypyridine, and 2-chloro-3-chloromethyl-8-methylquinoline, has been obtained using high-resolution X-ray diffraction data collected at 100 K based on the aspherical multipole modeling of electron density. These compounds represent type I (cis), type I (trans), and type II geometries, respectively, as defined for short Cl···Cl interactions. The experimental results are compared with the theoretical charge densities using theoretical structure factors obtained from a periodic quantum calculation at the B3LYP/6-31G** level. The topological features derived from the Bader's theory of atoms in molecules (AIM) approach unequivocally suggest that both cis and trans type I geometries show decreased repulsion, whereas type II geometry is attractive based on the nature of polar flattening of the electron density around the Cl atom.

摘要

已通过在 100 K 下收集的高分辨率 X 射线衍射数据,基于电子密度的非球多极建模,获得了三个化合物(2-氯-3-喹啉甲醇、2-氯-3-羟基吡啶和 2-氯-3-氯甲基-8-甲基喹啉)的实验电荷密度分布。这些化合物分别代表 I 型(顺式)、I 型(反式)和 II 型几何构型,如短 Cl···Cl 相互作用所定义。将实验结果与使用 B3LYP/6-31G** 水平的周期性量子计算获得的理论结构因子进行了比较。根据分子中原子的 Bader 理论(AIM)方法得出的拓扑特征,明确表明顺式和反式 I 型几何形状的排斥力减小,而 II 型几何形状是吸引力,这是基于 Cl 原子周围电子密度的极性扁平化的性质。

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