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G6PD突变数据库:葡萄糖-6-磷酸脱氢酶(G6PD)缺乏症的突变与表型数据库。

G6PD-MutDB: a mutation and phenotype database of glucose-6-phosphate (G6PD) deficiency.

作者信息

Zhao Xin, Li Zuofeng, Zhang Xiaoyan

机构信息

Department of Bioinformatics, Tongji University, Shanghai, P R China.

出版信息

J Bioinform Comput Biol. 2010 Dec;8 Suppl 1:101-9. doi: 10.1142/s021972001000518x.

Abstract

Glucose-6-phosphate dehydrogenase (G6PD) deficiency is the most common hereditary enzymatic disorder of red blood cells in humans due to mutations in the G6PD gene. The G6PD enzyme catalyzes the first step in the pentose phosphate pathway to protect cells against oxidative stress. Mutations in the G6PD gene will cause functional variants with various biochemical and clinical phenotypes. So far, about 160 mutations along with more than 400 biochemical variants have been described. G6PD-MutDB is a disease-specific resource of G6PD deficiency, collecting and integrating G6PD mutations with biochemical and clinical phenotypes. Data of G6PD deficiency is manually extracted from published papers, focusing primarily on variants with identified mutation and well-described quantitative phenotypes. G6PD-MutDB implements an approach, CNSHA predictor, to help identify a potential chronic non-spherocytic hemolytic anemia (CNSHA) phenotype of an unknown mutation. G6PD-MutDB is believed to facilitate analysis of relationship between molecular mutation and functional phenotype of G6PD deficiency owing to convenient data resource and useful tools. This database is available from http://202.120.189.88/mutdb.

摘要

葡萄糖-6-磷酸脱氢酶(G6PD)缺乏症是人类最常见的红细胞遗传性酶病,由G6PD基因突变引起。G6PD酶催化磷酸戊糖途径的第一步,以保护细胞免受氧化应激。G6PD基因突变会导致具有各种生化和临床表型的功能变异体。到目前为止,已描述了约160种突变以及400多种生化变异体。G6PD-MutDB是一个特定疾病的G6PD缺乏症资源库,收集并整合了G6PD突变及其生化和临床表型。G6PD缺乏症的数据是从已发表的论文中手动提取的,主要关注具有已确定突变和详细描述的定量表型的变异体。G6PD-MutDB采用一种名为CNSHA预测器的方法,以帮助识别未知突变的潜在慢性非球形细胞溶血性贫血(CNSHA)表型。由于数据资源方便且工具实用,G6PD-MutDB被认为有助于分析G6PD缺乏症的分子突变与功能表型之间的关系。该数据库可从http://202.120.189.88/mutdb获取。

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