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将传统医学的发现与现代药物研究相结合:链接开放数据的潜在作用。

Integrating findings of traditional medicine with modern pharmaceutical research: the potential role of linked open data.

机构信息

Digital Enterprise Research Institute, National University of Ireland Galway, IDA Business Park, Lower Dangan, Galway, Ireland.

出版信息

Chin Med. 2010 Dec 17;5:43. doi: 10.1186/1749-8546-5-43.

DOI:10.1186/1749-8546-5-43
PMID:21167050
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3017053/
Abstract

One of the biggest obstacles to progress in modern pharmaceutical research is the difficulty of integrating all available research findings into effective therapies for humans. Studies of traditionally used pharmacologically active plants and other substances in traditional medicines may be valuable sources of previously unknown compounds with therapeutic actions. However, the integration of findings from traditional medicines can be fraught with difficulties and misunderstandings. This article proposes an approach to use linked open data and Semantic Web technologies to address the heterogeneous data integration problem. The approach is based on our initial experiences with implementing an integrated web of data for a selected use-case, i.e., the identification of plant species used in Chinese medicine that indicate potential antidepressant activities.

摘要

在现代药物研究中,进展的最大障碍之一是难以将所有可用的研究结果整合到有效的人类治疗方法中。对传统药物中传统上使用的具有药理活性的植物和其他物质的研究可能是以前未知的具有治疗作用的化合物的宝贵来源。然而,将传统药物的研究结果整合起来可能会充满困难和误解。本文提出了一种使用链接开放数据和语义 Web 技术来解决异构数据集成问题的方法。该方法基于我们在为选定用例(即,鉴定在中国医学中使用的具有潜在抗抑郁作用的植物物种)实现集成数据网方面的初步经验。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ac80/3017053/015f4e1f4fc7/1749-8546-5-43-2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ac80/3017053/1e22918b1618/1749-8546-5-43-1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ac80/3017053/015f4e1f4fc7/1749-8546-5-43-2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ac80/3017053/1e22918b1618/1749-8546-5-43-1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ac80/3017053/015f4e1f4fc7/1749-8546-5-43-2.jpg

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本文引用的文献

1
Publishing Chinese medicine knowledge as Linked Data on the Web.在网络上发布中医药知识作为关联数据。
Chin Med. 2010 Jul 27;5:27. doi: 10.1186/1749-8546-5-27.
2
Establishing a distributed system for the simple representation and integration of diverse scientific assertions.建立一个用于简单表示和整合各种科学论断的分布式系统。
J Biomed Semantics. 2010 Jun 22;1 Suppl 1(Suppl 1):S5. doi: 10.1186/2041-1480-1-S1-S5.
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Semantic Web for data harmonization in Chinese medicine.中医药数据协调的语义 Web。
Brief Bioinform. 2013 Mar;14(2):238-50. doi: 10.1093/bib/bbs021. Epub 2012 May 15.
Chin Med. 2010 Jan 12;5:2. doi: 10.1186/1749-8546-5-2.
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A bioactive compound from Polygala tenuifolia regulates efficiency of chronic stress on hypothalamic-pituitary-adrenal axis.远志中的一种生物活性化合物调节慢性应激对下丘脑-垂体-肾上腺轴的作用效率。
Pharmazie. 2009 Sep;64(9):605-8.
5
[Effect of Polygala tenuifolia Willd YZ-50 on the mRNA expression of brain-derived neurotrophic factor and its receptor TrkB in rats with chronic stress depression].[远志YZ-50对慢性应激抑郁大鼠脑源性神经营养因子及其受体TrkB mRNA表达的影响]
Nan Fang Yi Ke Da Xue Xue Bao. 2009 Jun;29(6):1199-203.
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Interactions of Magnolia and Ziziphus extracts with selected central nervous system receptors.木兰提取物和酸枣提取物与特定中枢神经系统受体的相互作用。
J Ethnopharmacol. 2009 Jul 30;124(3):421-5. doi: 10.1016/j.jep.2009.05.040. Epub 2009 Jun 6.
7
Antidepressant-like synergism of extracts from magnolia bark and ginger rhizome alone and in combination in mice.厚朴树皮和生姜根茎提取物单独及联合使用对小鼠的抗抑郁样协同作用。
Prog Neuropsychopharmacol Biol Psychiatry. 2009 Jun 15;33(4):616-24. doi: 10.1016/j.pnpbp.2009.03.001. Epub 2009 Mar 11.
8
TCMGeneDIT: a database for associated traditional Chinese medicine, gene and disease information using text mining.TCMGeneDIT:一个利用文本挖掘技术整合中医、基因和疾病信息的数据库。
BMC Complement Altern Med. 2008 Oct 14;8:58. doi: 10.1186/1472-6882-8-58.
9
DrugBank and its relevance to pharmacogenomics.药物银行及其与药物基因组学的相关性。
Pharmacogenomics. 2008 Aug;9(8):1155-62. doi: 10.2217/14622416.9.8.1155.
10
Dynamic sub-ontology evolution for traditional Chinese medicine web ontology.用于中医网络本体的动态子本体演化
J Biomed Inform. 2008 Oct;41(5):790-805. doi: 10.1016/j.jbi.2008.05.008. Epub 2008 May 23.