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p6 cDNA 噬菌体展示系统中的移码。

Frameshifting in the p6 cDNA phage display system.

机构信息

Biomedical Research Institute, School of Life Sciences, Transnationale Universiteit Limburg and Hasselt University, Diepenbeek, Belgium.

出版信息

Molecules. 2010 Dec 20;15(12):9380-90. doi: 10.3390/molecules15129380.

Abstract

Phage display is a powerful technique that enables easy identification of targets for any type of ligand. Targets are displayed at the phage surface as a fusion protein to one of the phage coat proteins. By means of a repeated process of affinity selection on a ligand, specific enrichment of displayed targets will occur. In our studies using C-terminal display of cDNA fragments to phage coat protein p6, we noticed the occasional enrichment of targets that do not contain an open reading frame. This event has previously been described in other phage display studies using N-terminal display of targets to phage coat proteins and was due to uncommon translational events like frameshifting. The aim of this study was to examine if C-terminal display of targets to p6 is also subjected to frameshifting. To this end, an enriched target not containing an open reading frame was selected and an E-tag was coupled at the C-terminus in order to measure target display at the surface of the phage. The tagged construct was subsequently expressed in 3 different reading frames and display of both target and E-tag measured to detect the occurrence of frameshifting. As a result, we were able to demonstrate display of the target both in the 0 and in the +1 reading frame indicating that frameshifting can also take place when C-terminal fusion to minor coat protein p6 is applied.

摘要

噬菌体展示是一种强大的技术,可轻松鉴定任何类型配体的靶标。靶标作为融合蛋白展示在噬菌体外壳蛋白之一的表面。通过在配体上重复进行亲和选择过程,将特异性富集展示的靶标。在我们使用 cDNA 片段的 C 末端展示到噬菌体外壳蛋白 p6 的研究中,我们注意到偶尔会富集不包含开放阅读框的靶标。这种事件以前在其他使用噬菌体外壳蛋白的 N 末端展示靶标进行噬菌体展示研究中已有描述,这是由于罕见的翻译事件,如移码。本研究旨在检查 C 末端展示到 p6 的靶标是否也受到移码的影响。为此,选择了一个不包含开放阅读框的富集靶标,并在 C 末端偶联一个 E 标签,以测量噬菌体表面的靶标展示。随后,将标记的构建体在 3 个不同的阅读框中表达,并测量靶标和 E 标签的显示,以检测移码的发生。结果表明,我们能够证明目标在 0 和+1 阅读框中都有显示,表明当 C 末端融合到次要外壳蛋白 p6 时也会发生移码。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/aaeb/6259096/01ce11e910a8/molecules-15-09380-g001.jpg

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