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本文引用的文献

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Cell Metab. 2010 Sep 8;12(3):213-23. doi: 10.1016/j.cmet.2010.08.006.
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From noncoding variant to phenotype via SORT1 at the 1p13 cholesterol locus.通过位于 1p13 胆固醇基因座的 SORT1 从非编码变异到表型。
Nature. 2010 Aug 5;466(7307):714-9. doi: 10.1038/nature09266.
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Biological, clinical and population relevance of 95 loci for blood lipids.95 个与血脂相关的生物学、临床和人群相关性位点。
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Genomewide association studies and assessment of the risk of disease.全基因组关联研究与疾病风险评估
N Engl J Med. 2010 Jul 8;363(2):166-76. doi: 10.1056/NEJMra0905980.
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Identification and validation of genes affecting aortic lesions in mice.鉴定和验证影响小鼠主动脉病变的基因。
J Clin Invest. 2010 Jul;120(7):2414-22. doi: 10.1172/JCI42742. Epub 2010 Jun 23.
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Common SNPs explain a large proportion of the heritability for human height.常见的单核苷酸多态性解释了人类身高遗传的很大一部分。
Nat Genet. 2010 Jul;42(7):565-9. doi: 10.1038/ng.608. Epub 2010 Jun 20.
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Untangling HDL quantitative trait loci on mouse chromosome 5 and identifying Scarb1 and Acads as the underlying genes.解析小鼠 5 号染色体上的高密度脂蛋白定量性状基因座,并鉴定 Scarb1 和 Acads 为潜在基因。
J Lipid Res. 2010 Sep;51(9):2706-13. doi: 10.1194/jlr.M008110. Epub 2010 Jun 19.
8
Combining QTL data for HDL cholesterol levels from two different species leads to smaller confidence intervals.将两个不同物种的高密度脂蛋白胆固醇水平的 QTL 数据进行合并,会导致置信区间更小。
Heredity (Edinb). 2010 Nov;105(5):426-32. doi: 10.1038/hdy.2010.75. Epub 2010 Jun 16.
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Targeted deletion of the 9p21 non-coding coronary artery disease risk interval in mice.在小鼠中靶向敲除 9p21 非编码冠心病风险区间。
Nature. 2010 Mar 18;464(7287):409-12. doi: 10.1038/nature08801. Epub 2010 Feb 21.
10
Genome-wide association analysis of high-density lipoprotein cholesterol in the population-based KORA study sheds new light on intergenic regions.在基于人群的KORA研究中,对高密度脂蛋白胆固醇进行全基因组关联分析,为基因间区域带来了新的认识。
Circ Cardiovasc Genet. 2008 Oct;1(1):10-20. doi: 10.1161/CIRCGENETICS.108.776708.

结合血脂异常和动脉粥样硬化的人类全基因组数据和动物模型数据。

Combining genome-wide data from humans and animal models of dyslipidemia and atherosclerosis.

机构信息

Department of Cell Biology, Lerner Research Institute, Cleveland Clinic, Ohio, USA.

出版信息

Curr Opin Lipidol. 2011 Apr;22(2):100-5. doi: 10.1097/MOL.0b013e328342a375.

DOI:10.1097/MOL.0b013e328342a375
PMID:21178769
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3347921/
Abstract

PURPOSE OF REVIEW

Comparative genomics allows researchers to combine genome-wide association data from humans with studies in animal models in order to assist in the identification of the genes and the genetic variants that modify susceptibility to dyslipidemia and atherosclerosis.

RECENT FINDINGS

Association and linkage studies in human and rodent species have been successful in identifying genetic loci associated with complex traits, but have been less robust in identifying and validating the responsible gene and/or genetic variants. Recent technological advancements have assisted in the development of comparative genomic approaches, which rely on the combination of human and rodent datasets and bioinformatics tools, followed by the narrowing of concordant loci and improved identification of candidate genes and genetic variants. Additionally, candidate genes and genetic variants identified by these methods have been further validated and functionally investigated in animal models, a process that is not feasible in humans.

SUMMARY

Comparative genomic approaches have led to the identification and validation of several new genes, including a few not previously implicated, as modifiers of plasma lipid levels and atherosclerosis, yielding new insights into the biological mechanisms of these complex traits.

摘要

目的综述

比较基因组学使研究人员能够将人类的全基因组关联数据与动物模型研究相结合,以协助确定改变血脂异常和动脉粥样硬化易感性的基因和遗传变异。

最近的发现

在人类和啮齿动物物种中的关联和连锁研究成功地确定了与复杂性状相关的遗传位点,但在确定和验证负责的基因和/或遗传变异方面则不那么稳健。最近的技术进步有助于比较基因组方法的发展,该方法依赖于人类和啮齿动物数据集和生物信息学工具的组合,然后是对一致的基因座进行缩小,以及对候选基因和遗传变异的更好识别。此外,这些方法鉴定的候选基因和遗传变异在动物模型中进一步得到验证和功能研究,这在人类中是不可行的。

总结

比较基因组学方法已经确定和验证了几个新基因,包括一些以前未涉及的基因,作为血浆脂质水平和动脉粥样硬化的修饰基因,为这些复杂性状的生物学机制提供了新的见解。