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对称开启过渡中 TolC 出口道连续开放状态的结构。

Structures of sequential open states in a symmetrical opening transition of the TolC exit duct.

机构信息

Department of Pathology, Cambridge University, Cambridge CB2 1QP, United Kingdom.

出版信息

Proc Natl Acad Sci U S A. 2011 Feb 1;108(5):2112-7. doi: 10.1073/pnas.1012588108. Epub 2011 Jan 18.

Abstract

In bacterial drug resistance and virulence pumps, an inner membrane (IM) transporter and periplasmic adaptor recruit an outer membrane (OM) trimeric TolC exit duct that projects an α-helical tunnel across the periplasm. The TolC periplasmic entrance is closed by densely packed α-helical coiled coils, inner H7/H8, and outer H3/H4, constrained by a hydrogen bond network. On recruitment, these coiled coils must undergo transition to the open state. We present 2.9 Å resolution crystal structures of two sequential TolC open states in which the network is incrementally disrupted and channel conductances defined in lipid bilayers. Superimposition of TolC(RS) (370 pS) and TolC(YFRS) (1,000 pS) on the TolC(WT) closed state (80 pS) showed that in the initial open-state TolC(RS), relaxation already causes approximately 14° twisting and expansion of helix H7 at the periplasmic tip, increasing interprotomer distances from 12.2 Å in TolC(WT) to 18.9 Å. However, in the crystal structure, the weakened Asp(374) pore constriction was maintained at the closed state 11.3 Å(2). In the advanced open-state TolC(YFRS), there was little further expansion at the tip, to interprotomer 21.3 Å, but substantial movement of inner and outer coiled coils dilated the pore constriction. In particular, upon abolition of the TolC(YFRS) intraprotomer Tyr(362)-Asp(153) link, a redirection of Tyr(362) and "bulge" in H3 allowed a simple movement outward of H8, establishing a 50.3 Å(2) opening. Root mean square deviations (rmsds) over the coiled coils of the three protomers of TolC(RS) and TolC(YFRS) illustrate that, whereas independent movement at the periplasmic tips may feature in the initial stages of opening, full dilation of the pore constriction is entirely symmetrical.

摘要

在细菌药物耐药性和毒力泵中,内膜(IM)转运蛋白和周质衔接蛋白募集一个外膜(OM)三聚体 TolC 出口管道,该管道在周质中伸出一个α-螺旋隧道。TolC 周质入口由紧密堆积的α-螺旋卷曲螺旋、内 H7/H8 和外 H3/H4 封闭,由氢键网络约束。在募集时,这些卷曲螺旋必须过渡到开放状态。我们呈现了两个连续的 TolC 开放状态的 2.9Å 分辨率晶体结构,其中网络逐渐被破坏,通道电导率在脂质双层中被定义。将 TolC(RS)(370pS)和 TolC(YFRS)(1000pS)与 TolC(WT) 关闭状态(80pS)叠加显示,在初始开放状态 TolC(RS)中,松弛已经导致大约 14°的扭曲和周质尖端处 H7 的扩张,增加了蛋白间距离从 TolC(WT)的 12.2Å 增加到 18.9Å。然而,在晶体结构中,在关闭状态 11.3Å(2)处保持了较弱的 Asp(374)孔限制。在高级开放状态 TolC(YFRS)中,尖端处几乎没有进一步扩张,达到蛋白间 21.3Å,但内、外卷曲螺旋的大量运动扩张了孔限制。特别是,在废除 TolC(YFRS)蛋白内 Tyr(362)-Asp(153)键后,Tyr(362)的重定向和 H3 的“隆起”允许 H8 简单向外移动,建立了 50.3Å(2)的开口。TolC(RS)和 TolC(YFRS)的三个原体卷曲螺旋的均方根偏差(rmsd)表明,虽然在开放的初始阶段可能存在周质尖端的独立运动,但孔限制的完全扩张是完全对称的。

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