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1
Structure, function and inhibition of RND efflux pumps in Gram-negative bacteria: an update.革兰氏阴性菌中RND外排泵的结构、功能及抑制作用:最新进展
Curr Opin Microbiol. 2009 Oct;12(5):512-9. doi: 10.1016/j.mib.2009.07.003. Epub 2009 Aug 5.
2
The assembled structure of a complete tripartite bacterial multidrug efflux pump.完整的三方细菌多药外排泵的组装结构。
Proc Natl Acad Sci U S A. 2009 Apr 28;106(17):7173-8. doi: 10.1073/pnas.0900693106. Epub 2009 Apr 2.
3
Accelerating and focusing protein-protein docking correlations using multi-dimensional rotational FFT generating functions.使用多维旋转快速傅里叶变换生成函数加速并聚焦蛋白质-蛋白质对接相关性。
Bioinformatics. 2008 Sep 1;24(17):1865-73. doi: 10.1093/bioinformatics/btn334. Epub 2008 Jun 30.
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Assembly and channel opening in a bacterial drug efflux machine.细菌药物外排机器中的组装与通道开放
Mol Cell. 2008 Apr 11;30(1):114-21. doi: 10.1016/j.molcel.2008.02.015.
5
A periplasmic coiled-coil interface underlying TolC recruitment and the assembly of bacterial drug efflux pumps.TolC募集及细菌药物外排泵组装背后的周质卷曲螺旋界面。
Proc Natl Acad Sci U S A. 2007 Mar 13;104(11):4612-7. doi: 10.1073/pnas.0610160104. Epub 2007 Mar 5.
6
Structural asymmetry of AcrB trimer suggests a peristaltic pump mechanism.AcrB三聚体的结构不对称性表明其具有蠕动泵机制。
Science. 2006 Sep 1;313(5791):1295-8. doi: 10.1126/science.1131542.
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Crystal structures of a multidrug transporter reveal a functionally rotating mechanism.一种多药转运蛋白的晶体结构揭示了一种功能性旋转机制。
Nature. 2006 Sep 14;443(7108):173-9. doi: 10.1038/nature05076. Epub 2006 Aug 16.
8
Conformational flexibility in the multidrug efflux system protein AcrA.多药外排系统蛋白AcrA中的构象灵活性。
Structure. 2006 Mar;14(3):577-87. doi: 10.1016/j.str.2005.11.015.
9
Direct interaction of multidrug efflux transporter AcrB and outer membrane channel TolC detected via site-directed disulfide cross-linking.通过定点二硫键交联检测多药外排转运蛋白AcrB与外膜通道蛋白TolC的直接相互作用。
Biochemistry. 2005 Aug 23;44(33):11115-21. doi: 10.1021/bi050452u.
10
Three's company: component structures bring a closer view of tripartite drug efflux pumps.三位一体:组成结构让三方药物外排泵的视图更清晰。
Curr Opin Struct Biol. 2004 Dec;14(6):741-7. doi: 10.1016/j.sbi.2004.10.003.

对称开启过渡中 TolC 出口道连续开放状态的结构。

Structures of sequential open states in a symmetrical opening transition of the TolC exit duct.

机构信息

Department of Pathology, Cambridge University, Cambridge CB2 1QP, United Kingdom.

出版信息

Proc Natl Acad Sci U S A. 2011 Feb 1;108(5):2112-7. doi: 10.1073/pnas.1012588108. Epub 2011 Jan 18.

DOI:10.1073/pnas.1012588108
PMID:21245342
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3033246/
Abstract

In bacterial drug resistance and virulence pumps, an inner membrane (IM) transporter and periplasmic adaptor recruit an outer membrane (OM) trimeric TolC exit duct that projects an α-helical tunnel across the periplasm. The TolC periplasmic entrance is closed by densely packed α-helical coiled coils, inner H7/H8, and outer H3/H4, constrained by a hydrogen bond network. On recruitment, these coiled coils must undergo transition to the open state. We present 2.9 Å resolution crystal structures of two sequential TolC open states in which the network is incrementally disrupted and channel conductances defined in lipid bilayers. Superimposition of TolC(RS) (370 pS) and TolC(YFRS) (1,000 pS) on the TolC(WT) closed state (80 pS) showed that in the initial open-state TolC(RS), relaxation already causes approximately 14° twisting and expansion of helix H7 at the periplasmic tip, increasing interprotomer distances from 12.2 Å in TolC(WT) to 18.9 Å. However, in the crystal structure, the weakened Asp(374) pore constriction was maintained at the closed state 11.3 Å(2). In the advanced open-state TolC(YFRS), there was little further expansion at the tip, to interprotomer 21.3 Å, but substantial movement of inner and outer coiled coils dilated the pore constriction. In particular, upon abolition of the TolC(YFRS) intraprotomer Tyr(362)-Asp(153) link, a redirection of Tyr(362) and "bulge" in H3 allowed a simple movement outward of H8, establishing a 50.3 Å(2) opening. Root mean square deviations (rmsds) over the coiled coils of the three protomers of TolC(RS) and TolC(YFRS) illustrate that, whereas independent movement at the periplasmic tips may feature in the initial stages of opening, full dilation of the pore constriction is entirely symmetrical.

摘要

在细菌药物耐药性和毒力泵中,内膜(IM)转运蛋白和周质衔接蛋白募集一个外膜(OM)三聚体 TolC 出口管道,该管道在周质中伸出一个α-螺旋隧道。TolC 周质入口由紧密堆积的α-螺旋卷曲螺旋、内 H7/H8 和外 H3/H4 封闭,由氢键网络约束。在募集时,这些卷曲螺旋必须过渡到开放状态。我们呈现了两个连续的 TolC 开放状态的 2.9Å 分辨率晶体结构,其中网络逐渐被破坏,通道电导率在脂质双层中被定义。将 TolC(RS)(370pS)和 TolC(YFRS)(1000pS)与 TolC(WT) 关闭状态(80pS)叠加显示,在初始开放状态 TolC(RS)中,松弛已经导致大约 14°的扭曲和周质尖端处 H7 的扩张,增加了蛋白间距离从 TolC(WT)的 12.2Å 增加到 18.9Å。然而,在晶体结构中,在关闭状态 11.3Å(2)处保持了较弱的 Asp(374)孔限制。在高级开放状态 TolC(YFRS)中,尖端处几乎没有进一步扩张,达到蛋白间 21.3Å,但内、外卷曲螺旋的大量运动扩张了孔限制。特别是,在废除 TolC(YFRS)蛋白内 Tyr(362)-Asp(153)键后,Tyr(362)的重定向和 H3 的“隆起”允许 H8 简单向外移动,建立了 50.3Å(2)的开口。TolC(RS)和 TolC(YFRS)的三个原体卷曲螺旋的均方根偏差(rmsd)表明,虽然在开放的初始阶段可能存在周质尖端的独立运动,但孔限制的完全扩张是完全对称的。