Key Laboratory of Mechanics on Disaster and Environment in Western China, Lanzhou University, Lanzhou, Gansu, China.
J Mech Behav Biomed Mater. 2011 Feb;4(2):174-9. doi: 10.1016/j.jmbbm.2010.11.008. Epub 2010 Nov 21.
As an extension of the generalized bead-rod model developed earlier by the authors, this paper proposes a method for Brownian dynamics simulations of charged semiflexible polymers confined to various curved surfaces such as spherical, cylindrical, ellipsoidal and toroidal. We model charged semiflexible polymers as discrete wormlike chains consisting of virtual beads connected by inextensible rods with length varying according to the characteristic radius of curvature of the confining surface. The long-range electrostatic interactions are incorporated via the Debye-Hueckel potential. The geometrical constraints associated with the inextensible rods are realized by the so-called linear constraint solver. For a semiflexible polymer chain confined to a spherical surface, an analytical expression for the winding number is obtained by using an existing exact closed-form solution of the mean-square end-to-end distance. The proposed simulation method is then validated against theoretical predictions for both charged and uncharged polymer chains under surface confinements.
作为作者先前开发的广义珠-棒模型的扩展,本文提出了一种用于布朗动力学模拟受限在各种曲面(如球形、圆柱形、椭圆形和环形)中带电半柔性聚合物的方法。我们将带电半柔性聚合物建模为离散的蠕虫链,由虚拟珠粒组成,通过不可伸长的棒连接,棒的长度根据约束表面的特征曲率半径而变化。长程静电相互作用通过 Debye-Hueckel 势来实现。不可伸长棒的几何约束通过所谓的线性约束求解器来实现。对于受限在球形表面上的半柔性聚合物链,通过使用均方根末端到末端距离的现有精确闭式解来获得缠绕数的解析表达式。然后,该模拟方法针对表面约束下的带电和不带电聚合物链的理论预测进行了验证。