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离子溶剂化的电荷镜像反应场法研究。

Ionic solvation studied by image-charge reaction field method.

机构信息

Department of Physics and Optical Science, University of North Carolina at Charlotte, Charlotte, North Carolina 28223, USA.

出版信息

J Chem Phys. 2011 Jan 28;134(4):044105. doi: 10.1063/1.3530094.

DOI:10.1063/1.3530094
PMID:21280685
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3045217/
Abstract

In a preceding paper [J. Chem. Phys. 131, 154103 (2009)], we introduced a new, hybrid explicit/implicit method to treat electrostatic interactions in computer simulations, and tested its performance for liquid water. In this paper, we report further tests of this method, termed the image-charge solvation model (ICSM), in simulations of ions solvated in water. We find that our model can faithfully reproduce known solvation properties of sodium and chloride ions. The charging free energy of a single sodium ion is in excellent agreement with the estimates by other electrostatics methods, while offering much lower finite-size errors. Similarly, the potentials of mean force computed for Na-Cl, Na-Na, and Cl-Cl pairs closely reproduce those reported previously. Collectively, our results demonstrate the superior accuracy of the proposed ICSM method for simulations of mixed media.

摘要

在之前的一篇论文中[J. Chem. Phys. 131, 154103 (2009)],我们引入了一种新的混合显式/隐式方法来处理计算机模拟中的静电相互作用,并对其在液态水中的性能进行了测试。在本文中,我们报告了这种方法的进一步测试,称为虚电荷溶剂化模型(ICSM),用于模拟水中溶剂化的离子。我们发现,我们的模型可以忠实地再现钠离子和氯离子的已知溶剂化性质。单个钠离子的充电自由能与其他静电方法的估计非常吻合,同时提供了更低的有限尺寸误差。同样,计算得到的 Na-Cl、Na-Na 和 Cl-Cl 对的平均力势也与之前报道的结果非常接近。总的来说,我们的结果表明,所提出的 ICSM 方法在混合介质模拟中具有更高的准确性。

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Ionic solvation studied by image-charge reaction field method.离子溶剂化的电荷镜像反应场法研究。
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2
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J Comput Phys. 2013 Jul 1;245:84-106. doi: 10.1016/j.jcp.2013.03.027.
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Effect of the Reaction Field on Molecular Forces and Torques Revealed by an Image-Charge Solvation Model.镜像电荷溶剂化模型揭示反应场对分子力和扭矩的影响
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本文引用的文献

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Optimized Radii for Poisson-Boltzmann Calculations with the AMBER Force Field.AMBER 力场下泊松-玻尔兹曼计算的优化半径。
J Chem Theory Comput. 2005 May;1(3):484-93. doi: 10.1021/ct049834o.
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A comparable study of image approximations to the reaction field.对反应场的图像近似值进行的一项可比研究。
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An image-based reaction field method for electrostatic interactions in molecular dynamics simulations of aqueous solutions.基于图像的反应场方法用于水溶液分子动力学模拟中的静电相互作用。
J Chem Phys. 2009 Oct 21;131(15):154103. doi: 10.1063/1.3245232.
4
Removing systematic errors in interionic potentials of mean force computed in molecular simulations using reaction-field-based electrostatics.消除使用基于反应场的静电学在分子模拟中计算的平均力离子间势中的系统误差。
J Chem Phys. 2009 Mar 14;130(10):104106. doi: 10.1063/1.3081138.
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Curr Opin Struct Biol. 2008 Apr;18(2):140-8. doi: 10.1016/j.sbi.2008.01.003. Epub 2008 Mar 4.
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Extending the Fast Multipole Method for Charges inside a Dielectric Sphere in an Ionic Solvent: High Order Image Approximations for Reaction Fields.扩展用于离子溶剂中介电球体内电荷的快速多极子方法:反应场的高阶镜像近似
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Liquid-structure forces and electrostatic modulation of biomolecular interactions in solution.溶液中生物分子相互作用的液-结构力和静电调制
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Optimized atomic radii for protein continuum electrostatics solvation forces.用于蛋白质连续介质静电溶剂化力的优化原子半径
Biophys Chem. 1999 Apr 5;78(1-2):89-96. doi: 10.1016/s0301-4622(98)00236-1.
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Temperature dependence of the solubility of non-polar gases in water.非极性气体在水中溶解度的温度依赖性。
Biophys Chem. 1999 Apr 5;78(1-2):21-32. doi: 10.1016/s0301-4622(99)00018-6.
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Computation of methodology-independent ionic solvation free energies from molecular simulations. II. The hydration free energy of the sodium cation.通过分子模拟计算与方法无关的离子溶剂化自由能。II. 钠离子的水合自由能。
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