Structural Genomics Consortium, University of Toronto, Toronto, Ontario, Canada M5G 1L7.
Proteins. 2011 Mar;79(3):803-20. doi: 10.1002/prot.22919. Epub 2010 Dec 3.
We recently determined the first structures of inactivated and calcium-activated calcium-dependent protein kinases (CDPKs) from Apicomplexa. Calcium binding triggered a large conformational change that constituted a new mechanism in calcium signaling and a novel EF-hand fold (CAD, for CDPK activation domain). Thus we set out to determine if this mechanism was universal to all CDPKs. We solved additional CDPK structures, including one from the species Plasmodium. We highlight the similarities in sequence and structure across apicomplexan and plant CDPKs, and strengthen our observations that this novel mechanism could be universal to canonical CDPKs. Our new structures demonstrate more detailed steps in the mechanism of calcium activation and possible key players in regulation. Residues involved in making the largest conformational change are the most conserved across Apicomplexa, leading us to propose that the mechanism is indeed conserved. CpCDPK3_CAD and PfCDPK_CAD were captured at a possible intermediate conformation, lending insight into the order of activation steps. PfCDPK3_CAD adopts an activated fold, despite having an inactive EF-hand sequence in the N-terminal lobe. We propose that for most apicomplexan CDPKs, the mode of activation will be similar to that seen in our structures, while specific regulation of the inactive and active forms will require further investigation.
我们最近确定了来自顶复门生物的失活和钙激活钙依赖性蛋白激酶(CDPK)的第一个结构。钙结合引发了一个大的构象变化,构成了钙信号转导的新机制和一个新的 EF 手折叠(CAD,用于 CDPK 激活域)。因此,我们着手确定这种机制是否对所有 CDPK 都是普遍存在的。我们解决了其他 CDPK 结构,包括来自疟原虫的一个结构。我们强调了顶复门生物和植物 CDPK 之间在序列和结构上的相似性,并加强了我们的观察,即这种新的机制可能对典型的 CDPK 是普遍存在的。我们的新结构更详细地展示了钙激活的机制和可能的调节关键因素。参与产生最大构象变化的残基在顶复门生物中是最保守的,这使我们提出该机制确实是保守的。CpCDPK3_CAD 和 PfCDPK_CAD 被捕获在可能的中间构象中,深入了解激活步骤的顺序。PfCDPK3_CAD 采用激活折叠,尽管其 N 端结构域中的 EF 手序列是无活性的。我们提出,对于大多数顶复门生物的 CDPK,激活模式将与我们的结构中观察到的类似,而对无活性和活性形式的具体调节将需要进一步研究。