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利用计算机辅助药物设计和药物化学策略对抗糖尿病。

Using computer-aided drug design and medicinal chemistry strategies in the fight against diabetes.

机构信息

Departamento de Ciencias Farmaceuticas, Faculdade de Ciencias Farmaceuticas de Ribeirao Preto, Universidade de Sao Paulo, Av. do Cafe, s/n, Monte Alegre, 14040-903, Ribeirao Preto-SP, Brazil.

出版信息

J Biomol Struct Dyn. 2011 Apr;28(5):787-96. doi: 10.1080/07391102.2011.10508606.

Abstract

The aim of this work is to present a simple, practical and efficient protocol for drug design, in particular Diabetes, which includes selection of the illness, good choice of a target as well as a bioactive ligand and then usage of various computer aided drug design and medicinal chemistry tools to design novel potential drug candidates in different diseases. We have selected the validated target dipeptidyl peptidase IV (DPP-IV), whose inhibition contributes to reduce glucose levels in type 2 diabetes patients. The most active inhibitor with complex X-ray structure reported was initially extracted from the BindingDB database. By using molecular modification strategies widely used in medicinal chemistry, besides current state-of-the-art tools in drug design (including flexible docking, virtual screening, molecular interaction fields, molecular dynamics, ADME and toxicity predictions), we have proposed 4 novel potential DPP-IV inhibitors with drug properties for Diabetes control, which have been supported and validated by all the computational tools used herewith.

摘要

这项工作的目的是提出一种简单、实用、高效的药物设计方案,特别是针对糖尿病,包括选择疾病、选择良好的靶点和生物活性配体,然后使用各种计算机辅助药物设计和药物化学工具,设计不同疾病的新型潜在药物候选物。我们选择了经过验证的靶标二肽基肽酶 IV(DPP-IV),其抑制作用有助于降低 2 型糖尿病患者的血糖水平。最初从 BindingDB 数据库中提取了报告的最活跃抑制剂的复合物 X 射线结构。通过使用药物化学中广泛使用的分子修饰策略,以及药物设计中的最新工具(包括柔性对接、虚拟筛选、分子相互作用场、分子动力学、ADME 和毒性预测),我们提出了 4 种具有糖尿病控制药物特性的新型潜在 DPP-IV 抑制剂,这些抑制剂得到了所有使用的计算工具的支持和验证。

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