Sequence determinants of histone-DNA binding preferences: comment on "Cracking the chromatin code: precise rule of nucleosome positioning" by Edward N. Trifonov.
作者信息
Morozov Alexandre V
机构信息
Department of Physics and Astronomy and BioMaPS Institute for Quantitative Biology, Rutgers University, Piscataway, NJ 08854, United States.
出版信息
Phys Life Rev. 2011 Mar;8(1):62-3; discussion 69-72. doi: 10.1016/j.plrev.2011.01.013. Epub 2011 Feb 2.
Abstract
摘要
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本文引用的文献
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Phys Life Rev. 2011 Mar;8(1):39-50. doi: 10.1016/j.plrev.2011.01.004. Epub 2011 Jan 19.
2
High-throughput sequencing reveals a simple model of nucleosome energetics.高通量测序揭示了核小体能量学的简单模型。
Proc Natl Acad Sci U S A. 2010 Dec 7;107(49):20998-1003. doi: 10.1073/pnas.1003838107. Epub 2010 Nov 17.
3
Single-base resolution nucleosome mapping on DNA sequences.单碱基分辨率核小体在 DNA 序列上的作图。
J Biomol Struct Dyn. 2010 Aug;28(1):107-22. doi: 10.1080/07391102.2010.10507347.
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G+C content dominates intrinsic nucleosome occupancy.G+C 含量主导固有核小体占有率。
BMC Bioinformatics. 2009 Dec 22;10:442. doi: 10.1186/1471-2105-10-442.
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Intrinsic histone-DNA interactions are not the major determinant of nucleosome positions in vivo.内在组蛋白与DNA的相互作用并非体内核小体位置的主要决定因素。
Nat Struct Mol Biol. 2009 Aug;16(8):847-52. doi: 10.1038/nsmb.1636. Epub 2009 Jul 20.
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Using DNA mechanics to predict in vitro nucleosome positions and formation energies.利用DNA力学预测体外核小体位置和形成能。
Nucleic Acids Res. 2009 Aug;37(14):4707-22. doi: 10.1093/nar/gkp475. Epub 2009 Jun 9.
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Nature. 2009 Mar 19;458(7236):362-6. doi: 10.1038/nature07667. Epub 2008 Dec 17.
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Flexibility and constraint in the nucleosome core landscape of Caenorhabditis elegans chromatin.秀丽隐杆线虫染色质核小体核心景观中的灵活性与限制
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