Rae Robbie, Schlager Benjamin, Sommer Ralf J
Max-Planck Institute for Developmental Biology, Department of Evolutionary Biology, D-72076 Tübingen, Germany.
CSH Protoc. 2008 Oct 1;2008:pdb.emo102. doi: 10.1101/pdb.emo102.
INTRODUCTIONPristionchus pacificus is a nematode that has been established as a model system for evolutionary developmental biology. Initially, P. pacificus was used as a convenient nematode with which to compare the processes of vulva and gonad development as well as sex determination to Caenorhabditis elegans, one of the best-studied animal models. P. pacificus shares many features with C. elegans, including a short generation time, its ability to be easily cultured in the laboratory, and self-fertilization as a mode of reproduction. These features allowed forward and reverse genetic tools to be developed for this species. The application of these tools for genetic and molecular analysis of vulva formation revealed substantial differences between P. pacificus and C. elegans. The genome of P. pacificus has recently been sequenced and showed an expansion of protein-coding genes compared with C. elegans. Interestingly, the P. pacificus genome encodes some genes, such as cellulases, that are known to be present only in plant-parasitic nematodes. Many of the putative functions of the predicted genes in the genome are related to the ecology of P. pacificus and other Pristionchus species. Pristionchus nematodes can be isolated from beetles and soil, indicating that the ecology of P. pacificus is strikingly different from that of C. elegans. Generally, Pristionchus species show an unexpected level of species specificity in their beetle associations, providing a unique opportunity to study the genetic and molecular mechanisms underlying the interactions of organisms in the environment. Thus, P. pacificus is not only an established model system for evolutionary developmental biology, but also an emerging model system for the evolution of complex life-history traits.
引言
太平洋小杆线虫是一种已被确立为进化发育生物学模型系统的线虫。最初,太平洋小杆线虫被用作一种方便的线虫,用于将阴门和性腺发育过程以及性别决定过程与秀丽隐杆线虫(研究最深入的动物模型之一)进行比较。太平洋小杆线虫与秀丽隐杆线虫有许多共同特征,包括世代时间短、能够在实验室中轻松培养以及以自体受精作为繁殖方式。这些特征使得能够为该物种开发正向和反向遗传工具。这些工具在阴门形成的遗传和分子分析中的应用揭示了太平洋小杆线虫和秀丽隐杆线虫之间的显著差异。最近对太平洋小杆线虫的基因组进行了测序,结果显示与秀丽隐杆线虫相比,其蛋白质编码基因有所扩展。有趣的是,太平洋小杆线虫基因组编码一些基因,如纤维素酶,而这些基因已知仅存在于植物寄生线虫中。基因组中预测基因的许多假定功能与太平洋小杆线虫和其他小杆线虫属物种的生态学有关。小杆线虫可以从甲虫和土壤中分离出来,这表明太平洋小杆线虫的生态学与秀丽隐杆线虫的生态学截然不同。一般来说,小杆线虫属物种在其与甲虫的关联中表现出意想不到的物种特异性水平,为研究环境中生物体相互作用背后的遗传和分子机制提供了独特的机会。因此,太平洋小杆线虫不仅是进化发育生物学的既定模型系统,也是复杂生活史特征进化的新兴模型系统。