Coolen Marion, Menuet Arnaud, Chassoux Danièle, Compagnucci Claudia, Henry Sébastien, Lévèque Laurent, Da Silva Corinne, Gavory Frédérick, Samain Sylvie, Wincker Patrick, Thermes Claude, D'Aubenton-Carafa Yves, Rodriguez-Moldes Isabel, Naylor Gavin, Depew Michael, Sourdaine Pascal, Mazan Sylvie
CNRS UMR 6218 Immunologie et Embryologie Moléculaires, Université Sciences et Techniques d'Orléans, 45071 Orléans, France.
CSH Protoc. 2008 Dec 1;2008:pdb.emo111. doi: 10.1101/pdb.emo111.
INTRODUCTIONDue to their large size and long generation times, chondrichthyans have been largely ignored by geneticists. However, their key phylogenetic position makes them ideal subjects to study the molecular bases of the important morphological and physiological innovations that characterize jawed vertebrates. Such analyses are crucial to understanding the origin of the complex genetic mechanisms unraveled in osteichthyans. The small spotted dogfish Scyliorhinus canicula, a representative of the largest order of extant sharks, presents a number of advantages in this context. Due to its relatively small size among sharks, its abundance, and easy maintenance, the dogfish has been an important model in comparative anatomy and physiology for more than a century. Recently, revived interest has occurred with the development of large-scale transcriptomic and genomic resources, together with the establishment of facilities allowing massive egg and embryo production. These new tools open the way to molecular analyses of the elaborate physiological and sensory systems used by sharks. They also make it possible to take advantage of unique characteristics of these species, such as organ zonation, in analyses of cell proliferation and differentiation. Finally, they offer important perspectives to evolutionary developmental biology that will provide a better understanding of the origin and diversifications of jawed vertebrates. The dogfish whole-genome sequence, which may shortly become accessible, should establish this species as an essential shark reference, complementary to other chondrichthyan models. These analyses are likely to reveal an organism of an underestimated complexity, far from the primitive prototypical gnathostome anticipated in gradistic views.
引言
由于软骨鱼类体型巨大且世代时间长,遗传学家在很大程度上忽视了它们。然而,它们关键的系统发育位置使它们成为研究有颌脊椎动物重要形态和生理创新分子基础的理想对象。此类分析对于理解硬骨鱼类中揭示的复杂遗传机制的起源至关重要。在这方面,小斑点猫鲨(Scyliorhinus canicula),即现存鲨鱼中最大目(真鲨目)的代表,具有诸多优势。由于其在鲨鱼中相对较小的体型、丰富的数量以及易于饲养,一个多世纪以来,猫鲨一直是比较解剖学和生理学中的重要模型。近来,随着大规模转录组学和基因组资源的开发,以及能够大量生产卵和胚胎的设施的建立,人们对其兴趣再度兴起。这些新工具为对鲨鱼所使用的精细生理和感觉系统进行分子分析开辟了道路。它们还使得在细胞增殖和分化分析中能够利用这些物种的独特特征,如器官分区。最后,它们为进化发育生物学提供了重要视角,这将有助于更好地理解有颌脊椎动物的起源和多样化。不久可能获取的猫鲨全基因组序列应会使该物种成为一个重要的鲨鱼参考对象,对其他软骨鱼类模型起到补充作用。这些分析可能会揭示出一个复杂度被低估的生物体,与级进观点中预期的原始典型有颌脊椎动物大相径庭。