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1
Computational design of the sequence and structure of a protein-binding peptide.
J Am Chem Soc. 2011 Mar 30;133(12):4190-2. doi: 10.1021/ja110296z. Epub 2011 Mar 9.
2
GoLoco motif proteins binding to Galpha(i1): insights from molecular simulations.
J Mol Model. 2009 Dec;15(12):1491-9. doi: 10.1007/s00894-009-0516-z. Epub 2009 May 14.
3
Structural determinants of affinity enhancement between GoLoco motifs and G-protein alpha subunit mutants.
J Biol Chem. 2011 Feb 4;286(5):3351-8. doi: 10.1074/jbc.M110.190496. Epub 2010 Nov 29.
4
A Residue outside the Binding Site Determines the Gα Binding Specificity of GoLoco Motifs.
Biochemistry. 2018 Nov 27;57(47):6562-6569. doi: 10.1021/acs.biochem.8b00848. Epub 2018 Nov 15.
9
The structural basis of the dominant negative phenotype of the Gαi1β1γ2 G203A/A326S heterotrimer.
Acta Pharmacol Sin. 2016 Sep;37(9):1259-72. doi: 10.1038/aps.2016.69. Epub 2016 Aug 8.

引用本文的文献

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In silico screening of protein-binding peptides with an application to developing peptide inhibitors against antibiotic resistance.
PNAS Nexus. 2024 Nov 27;3(12):pgae541. doi: 10.1093/pnasnexus/pgae541. eCollection 2024 Dec.
2
A New Advanced Approach: Design and Screening of Affinity Peptide Ligands Using Computer Simulation Techniques.
Curr Top Med Chem. 2024;24(8):667-685. doi: 10.2174/0115680266281358240206112605.
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Discovery of novel helix binding sites at protein-protein interfaces.
Comput Struct Biotechnol J. 2019 Nov 11;17:1396-1403. doi: 10.1016/j.csbj.2019.11.001. eCollection 2019.
6
RosettaAntibodyDesign (RAbD): A general framework for computational antibody design.
PLoS Comput Biol. 2018 Apr 27;14(4):e1006112. doi: 10.1371/journal.pcbi.1006112. eCollection 2018 Apr.
8
Rosetta and the Design of Ligand Binding Sites.
Methods Mol Biol. 2016;1414:47-62. doi: 10.1007/978-1-4939-3569-7_4.
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Emerging Vaccine Technologies.
Vaccines (Basel). 2015 May 26;3(2):429-47. doi: 10.3390/vaccines3020429.
10
Computational design and experimental verification of a symmetric protein homodimer.
Proc Natl Acad Sci U S A. 2015 Aug 25;112(34):10714-9. doi: 10.1073/pnas.1505072112. Epub 2015 Aug 12.

本文引用的文献

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Computer-aided design of functional protein interactions.
Nat Chem Biol. 2009 Nov;5(11):797-807. doi: 10.1038/nchembio.251.
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Backbone flexibility in computational protein design.
Curr Opin Biotechnol. 2009 Aug;20(4):420-8. doi: 10.1016/j.copbio.2009.07.006. Epub 2009 Aug 24.
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Computational design of affinity and specificity at protein-protein interfaces.
Curr Opin Struct Biol. 2009 Aug;19(4):458-63. doi: 10.1016/j.sbi.2009.07.005. Epub 2009 Jul 29.
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Protein design in biological networks: from manipulating the input to modifying the output.
Protein Eng Des Sel. 2009 Sep;22(9):537-42. doi: 10.1093/protein/gzp032. Epub 2009 Jul 2.
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Regulator of G-protein signaling 14 (RGS14) is a selective H-Ras effector.
PLoS One. 2009;4(3):e4884. doi: 10.1371/journal.pone.0004884. Epub 2009 Mar 25.
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Algorithm for backrub motions in protein design.
Bioinformatics. 2008 Jul 1;24(13):i196-204. doi: 10.1093/bioinformatics/btn169.
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Macromolecular modeling with rosetta.
Annu Rev Biochem. 2008;77:363-82. doi: 10.1146/annurev.biochem.77.062906.171838.
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Dead-end elimination with backbone flexibility.
Bioinformatics. 2007 Jul 1;23(13):i185-94. doi: 10.1093/bioinformatics/btm197.
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Progress in computational protein design.
Curr Opin Biotechnol. 2007 Aug;18(4):305-11. doi: 10.1016/j.copbio.2007.04.009. Epub 2007 Jul 20.

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