Caré Bertrand R, Soula Hédi A
Université de Lyon, Laboratoire d'InfoRmatique en Image et Systèmes d'information, CNRS UMR5205, F-69621, France.
BMC Syst Biol. 2011 Mar 31;5:48. doi: 10.1186/1752-0509-5-48.
Cellular response to changes in the concentration of different chemical species in the extracellular medium is induced by ligand binding to dedicated transmembrane receptors. Receptor density, distribution, and clustering may be key spatial features that influence effective and proper physical and biochemical cellular responses to many regulatory signals. Classical equations describing this kind of binding kinetics assume the distributions of interacting species to be homogeneous, neglecting by doing so the impact of clustering. As there is experimental evidence that receptors tend to group in clusters inside membrane domains, we investigated the effects of receptor clustering on cellular receptor ligand binding.
We implemented a model of receptor binding using a Monte-Carlo algorithm to simulate ligand diffusion and binding. In some simple cases, analytic solutions for binding equilibrium of ligand on clusters of receptors are provided, and supported by simulation results. Our simulations show that the so-called "apparent" affinity of the ligand for the receptor decreases with clustering although the microscopic affinity remains constant.
Changing membrane receptors clustering could be a simple mechanism that allows cells to change and adapt its affinity/sensitivity toward a given stimulus.
细胞对细胞外介质中不同化学物质浓度变化的反应是由配体与特定跨膜受体结合所诱导的。受体的密度、分布和聚集可能是影响细胞对许多调节信号产生有效且适当的物理和生化反应的关键空间特征。描述这种结合动力学的经典方程假定相互作用物质的分布是均匀的,因而忽略了聚集的影响。由于有实验证据表明受体倾向于在膜结构域内聚集成簇,我们研究了受体聚集对细胞受体配体结合的影响。
我们使用蒙特卡罗算法实现了一个受体结合模型,以模拟配体的扩散和结合。在一些简单情况下,给出了配体在受体簇上结合平衡的解析解,并得到了模拟结果的支持。我们的模拟表明,尽管微观亲和力保持不变,但配体对受体的所谓“表观”亲和力会随着聚集而降低。
改变膜受体聚集可能是一种简单的机制,使细胞能够改变并适应其对给定刺激的亲和力/敏感性。