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共生特性及快速生长模式菌株大豆根瘤菌 HH103 基因组序列的初步分析。

Symbiotic properties and first analyses of the genomic sequence of the fast growing model strain Sinorhizobium fredii HH103 nodulating soybean.

机构信息

Departamento de Microbiología, Universidad de Sevilla, Sevilla, Spain.

出版信息

J Biotechnol. 2011 Aug 20;155(1):11-9. doi: 10.1016/j.jbiotec.2011.03.016. Epub 2011 Mar 30.

DOI:10.1016/j.jbiotec.2011.03.016
PMID:21458507
Abstract

Glycine max (soybean) plants can be nodulated by fast-growing rhizobial strains of the genus Sinorhizobium as well as by slow-growing strains clustered in the genus Bradyrhizobium. Fast-growing rhizobia strains with different soybean cultivar specificities have been isolated from Chinese soils and from other geographical regions. Most of these strains have been clustered into the species Sinorhizobium fredii. The S. fredii strain HH103 was isolated from soils of Hubei province, Central China and was first described in 1985. This strain is capable to nodulate American and Asiatic soybean cultivars and many other different legumes and is so far the best studied fast-growing soybean-nodulating strain. Additionally to the chromosome S. fredii HH103 carries five indigenous plasmids. The largest plasmid (pSfrHH103e) harbours genes for the production of diverse surface polysaccharides, such as exopolysaccharides (EPS), lipopolysaccharides (LPS), and capsular polysaccharides (KPS). The second largest plasmid (pSfrHH103d) is a typical symbiotic plasmid (pSym), carrying nodulation and nitrogen fixation genes. The present mini review focuses on symbiotic properties of S. fredii HH103, in particular on nodulation and surface polysaccharides aspects. The model strain S. fredii HH103 was chosen for genomic sequencing, which is currently in progress. First analyses of the draft genome sequence revealed an extensive synteny between the chromosomes of S. fredii HH103 and Rhizobium sp. NGR234.

摘要

大豆植株可以被属于中华根瘤菌属的快速生长的根瘤菌菌株以及属于慢生根瘤菌属的缓慢生长的菌株结瘤。已经从中国土壤和其他地理区域分离出具有不同大豆品种特异性的快速生长的根瘤菌菌株。这些菌株中的大多数已被聚类到中华根瘤菌属。S. fredii 菌株 HH103 从中国中部湖北省的土壤中分离出来,并于 1985 年首次描述。该菌株能够结瘤美洲和亚洲的大豆品种以及许多其他不同的豆科植物,是迄今为止研究最多的快速生长的大豆结瘤菌株。除了染色体外,S. fredii HH103 还携带五个本土质粒。最大的质粒(pSfrHH103e)携带产生各种表面多糖的基因,例如胞外多糖(EPS)、脂多糖(LPS)和荚膜多糖(KPS)。第二大质粒(pSfrHH103d)是一种典型的共生质粒(pSym),携带结瘤和固氮基因。本综述重点介绍了 S. fredii HH103 的共生特性,特别是在结瘤和表面多糖方面。选择模式菌株 S. fredii HH103 进行基因组测序,目前正在进行中。对 HH103 染色体的 draft 基因组序列的初步分析揭示了 S. fredii HH103 和 Rhizobium sp. NGR234 之间广泛的同线性。

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1
Symbiotic properties and first analyses of the genomic sequence of the fast growing model strain Sinorhizobium fredii HH103 nodulating soybean.共生特性及快速生长模式菌株大豆根瘤菌 HH103 基因组序列的初步分析。
J Biotechnol. 2011 Aug 20;155(1):11-9. doi: 10.1016/j.jbiotec.2011.03.016. Epub 2011 Mar 30.
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The Sinorhizobium fredii HH103 Genome: A Comparative Analysis With S. fredii Strains Differing in Their Symbiotic Behavior With Soybean.费氏中华根瘤菌HH103基因组:与在大豆共生行为上存在差异的费氏中华根瘤菌菌株的比较分析
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Sinorhizobium fredii HH103 mutants affected in capsular polysaccharide (KPS) are impaired for nodulation with soybean and Cajanus cajan.费氏中华根瘤菌HH103中受荚膜多糖(KPS)影响的突变体在与大豆和木豆结瘤方面存在缺陷。
Mol Plant Microbe Interact. 2006 Jan;19(1):43-52. doi: 10.1094/MPMI-19-0043.
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The effect of FITA mutations on the symbiotic properties of Sinorhizobium fredii varies in a chromosomal-background-dependent manner.费氏中华根瘤菌(Sinorhizobium fredii)中FITA突变对共生特性的影响因染色体背景而异。
Arch Microbiol. 2004 Feb;181(2):144-54. doi: 10.1007/s00203-003-0635-3. Epub 2003 Dec 20.
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NolR regulates diverse symbiotic signals of Sinorhizobium fredii HH103.NolR调控费氏中华根瘤菌HH103的多种共生信号。
Mol Plant Microbe Interact. 2004 Jun;17(6):676-85. doi: 10.1094/MPMI.2004.17.6.676.
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Inactivation of the Sinorhizobium fredii HH103 rhcJ gene abolishes nodulation outer proteins (Nops) secretion and decreases the symbiotic capacity with soybean.费氏中华根瘤菌HH103的rhcJ基因失活会消除根瘤外蛋白(Nops)的分泌,并降低与大豆的共生能力。
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The Sinorhizobium (Ensifer) fredii HH103 Nodulation Outer Protein NopI Is a Determinant for Efficient Nodulation of Soybean and Cowpea Plants.费氏中华根瘤菌(Ensifer)HH103的结瘤外蛋白NopI是大豆和豇豆高效结瘤的一个决定因素。
Appl Environ Microbiol. 2017 Feb 15;83(5). doi: 10.1128/AEM.02770-16. Print 2017 Mar 1.
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Sinorhizobium fredii HH103 does not strictly require KPS and/or EPS to nodulate Glycyrrhiza uralensis, an indeterminate nodule-forming legume.中华根瘤菌 HH103 并不严格要求 KPS 和/或 EPS 来结瘤甘草,一种不定根瘤形成豆科植物。
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Sinorhizobium fredii HH103 rkp-3 genes are required for K-antigen polysaccharide biosynthesis, affect lipopolysaccharide structure and are essential for infection of legumes forming determinate nodules.中华根瘤菌 HH103 rkp-3 基因参与 K 抗原多糖生物合成,影响脂多糖结构,对于形成定形根瘤的豆科植物的侵染是必需的。
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Strains HH103 and NGR234 Form Nitrogen Fixing Nodules With Diverse Wild Soybeans () From Central China but Are Ineffective on Northern China Accessions.菌株HH103和NGR234与来自中国中部的多种野生大豆()形成固氮根瘤,但对中国北方的种质无效。
Front Microbiol. 2018 Nov 21;9:2843. doi: 10.3389/fmicb.2018.02843. eCollection 2018.

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