相似文献
1
Topological variation in the evolution of new reactions in functionally diverse enzyme superfamilies.
Curr Opin Struct Biol. 2011 Jun;21(3):391-7. doi: 10.1016/j.sbi.2011.03.007. Epub 2011 Apr 1.
2
Divergent evolution of enzymatic function: mechanistically diverse superfamilies and functionally distinct suprafamilies.
Annu Rev Biochem. 2001;70:209-46. doi: 10.1146/annurev.biochem.70.1.209.
3
Large-Scale Analysis Exploring Evolution of Catalytic Machineries and Mechanisms in Enzyme Superfamilies.
J Mol Biol. 2016 Jan 29;428(2 Pt A):253-267. doi: 10.1016/j.jmb.2015.11.010. Epub 2015 Nov 14.
4
Catalysing new reactions during evolution: economy of residues and mechanism.
J Mol Biol. 2003 Aug 22;331(4):829-60. doi: 10.1016/s0022-2836(03)00734-4.
5
Superfamily active site templates.
Proteins. 2004 Jun 1;55(4):962-76. doi: 10.1002/prot.20099.
6
Evolution of function in protein superfamilies, from a structural perspective.
J Mol Biol. 2001 Apr 6;307(4):1113-43. doi: 10.1006/jmbi.2001.4513.
7
Evolutionarily conserved substrate substructures for automated annotation of enzyme superfamilies.
PLoS Comput Biol. 2008 Aug 1;4(8):e1000142. doi: 10.1371/journal.pcbi.1000142.
8
An atlas of the thioredoxin fold class reveals the complexity of function-enabling adaptations.
PLoS Comput Biol. 2009 Oct;5(10):e1000541. doi: 10.1371/journal.pcbi.1000541. Epub 2009 Oct 23.
9
Crystal structures of two functionally different thioredoxins in spinach chloroplasts.
J Mol Biol. 2000 Sep 8;302(1):135-54. doi: 10.1006/jmbi.2000.4006.
10
Evolutionary genomics of the HAD superfamily: understanding the structural adaptations and catalytic diversity in a superfamily of phosphoesterases and allied enzymes.
J Mol Biol. 2006 Sep 1;361(5):1003-34. doi: 10.1016/j.jmb.2006.06.049. Epub 2006 Jul 7.
引用本文的文献
1
Distinct or Overlapping Areas of Mitochondrial Thioredoxin 2 May Be Used for Its Covalent and Strong Non-Covalent Interactions with Protein Ligands.
Antioxidants (Basel). 2023 Dec 20;13(1):15. doi: 10.3390/antiox13010015.
2
Mechanisms of protein evolution.
Protein Sci. 2022 Jul;31(7):e4362. doi: 10.1002/pro.4362.
3
Hydrogen-Deuterium Exchange within Adenosine Deaminase, a TIM Barrel Hydrolase, Identifies Networks for Thermal Activation of Catalysis.
J Am Chem Soc. 2020 Nov 25;142(47):19936-19949. doi: 10.1021/jacs.0c07866. Epub 2020 Nov 12.
4
Crystal Structures of L-DOPA Dioxygenase from .
Biochemistry. 2019 Dec 31;58(52):5339-5350. doi: 10.1021/acs.biochem.9b00396. Epub 2019 Jun 25.
5
Genetic, structural, and functional analysis of pathogenic variations causing methylmalonyl-CoA epimerase deficiency.
Biochim Biophys Acta Mol Basis Dis. 2019 Jun 1;1865(6):1265-1272. doi: 10.1016/j.bbadis.2019.01.021. Epub 2019 Jan 22.
6
Informing Efforts to Develop Nitroreductase for Amine Production.
Molecules. 2018 Jan 24;23(2):211. doi: 10.3390/molecules23020211.
7
Cupincin: A Unique Protease Purified from Rice (Oryza sativa L.) Bran Is a New Member of the Cupin Superfamily.
PLoS One. 2016 Apr 11;11(4):e0152819. doi: 10.1371/journal.pone.0152819. eCollection 2016.
8
New insights about enzyme evolution from large scale studies of sequence and structure relationships.
J Biol Chem. 2014 Oct 31;289(44):30221-30228. doi: 10.1074/jbc.R114.569350. Epub 2014 Sep 10.
9
The evolution of enzyme function in the isomerases.
Curr Opin Struct Biol. 2014 Jun;26:121-30. doi: 10.1016/j.sbi.2014.06.002. Epub 2014 Jul 5.
10
Large-scale determination of sequence, structure, and function relationships in cytosolic glutathione transferases across the biosphere.
PLoS Biol. 2014 Apr 22;12(4):e1001843. doi: 10.1371/journal.pbio.1001843. eCollection 2014 Apr.
本文引用的文献
1
Analysis of the peroxiredoxin family: using active-site structure and sequence information for global classification and residue analysis.
Proteins. 2011 Mar;79(3):947-64. doi: 10.1002/prot.22936. Epub 2010 Dec 22.
2
GenBank.
Nucleic Acids Res. 2011 Jan;39(Database issue):D32-7. doi: 10.1093/nar/gkq1079. Epub 2010 Nov 10.
3
Structure-based insights into the catalytic power and conformational dexterity of peroxiredoxins.
Antioxid Redox Signal. 2011 Aug 1;15(3):795-815. doi: 10.1089/ars.2010.3624. Epub 2011 Apr 20.
4
Multiple catalytically active thioredoxin folds: a winning strategy for many functions.
Cell Mol Life Sci. 2010 Nov;67(22):3797-814. doi: 10.1007/s00018-010-0449-9. Epub 2010 Jul 13.
5
Crystallization and preliminary X-ray analysis of L-azetidine-2-carboxylate hydrolase from Pseudomonas sp. strain A2C.
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2010 Jul 1;66(Pt 7):801-4. doi: 10.1107/S1744309110017045. Epub 2010 Jun 24.
6
A new scaffold of an old protein fold ensures binding to the bisintercalator thiocoraline.
J Mol Biol. 2010 Mar 26;397(2):495-507. doi: 10.1016/j.jmb.2010.01.053. Epub 2010 Feb 1.
7
Divergence of biochemical function in the HAD superfamily: D-glycero-D-manno-heptose-1,7-bisphosphate phosphatase (GmhB).
Biochemistry. 2010 Feb 16;49(6):1072-81. doi: 10.1021/bi902018y.
8
Structural determinants of substrate recognition in the HAD superfamily member D-glycero-D-manno-heptose-1,7-bisphosphate phosphatase (GmhB) .
Biochemistry. 2010 Feb 16;49(6):1082-92. doi: 10.1021/bi902019q.
9
Markers of fitness in a successful enzyme superfamily.
Curr Opin Struct Biol. 2009 Dec;19(6):658-65. doi: 10.1016/j.sbi.2009.09.008. Epub 2009 Nov 2.
10
An atlas of the thioredoxin fold class reveals the complexity of function-enabling adaptations.
PLoS Comput Biol. 2009 Oct;5(10):e1000541. doi: 10.1371/journal.pcbi.1000541. Epub 2009 Oct 23.
Zotero 插件