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β-发夹的冷展开:分子水平的合理化。

Cold unfolding of β-hairpins: a molecular-level rationalization.

机构信息

Dipartimento di Scienze Applicate, Università di Napoli Parthenope, Centro Direzionale Isola C4, 80143 Napoli, Italy.

出版信息

Proteins. 2011 Jun;79(6):1739-46. doi: 10.1002/prot.22997. Epub 2011 Apr 4.

Abstract

Isolated β-hairpins in water have a temperature dependence of their conformational stability qualitatively resembling that of globular proteins, showing both cold and hot unfolding transitions. It is shown that a molecular-level rationalization of this cold unfolding can be provided extending the approach devised for globular proteins (Graziano G. Phys Chem Chem Phys 2010; 12:14245-14252). The decrease in the solvent-excluded volume upon folding, measured by the decrease in the solvent accessible surface area, produces a gain in configurational/translational entropy of water molecules that is the main stabilizing contribution of the folded conformation. This always stabilizing Gibbs energy contribution has a parabolic-like temperature dependence in water and is exactly counterbalanced at two temperatures (i.e., the cold and hot unfolding temperatures) by the always destabilizing Gibbs energy contribution due to the loss in conformational degrees of freedom of the peptide chain.

摘要

在水中,孤立的β发夹的构象稳定性随温度的变化与球状蛋白类似,表现出冷变性和热变性两种转变。研究表明,可以通过扩展用于球状蛋白的方法,从分子水平上对冷变性进行合理化解释(Graziano G. Phys Chem Chem Phys 2010; 12:14245-14252)。折叠过程中溶剂排除体积的减少(通过溶剂可及表面积的减少来测量)会导致水分子构象/平动熵的增加,这是折叠构象的主要稳定贡献。在水中,这种始终稳定的吉布斯能贡献具有抛物线样的温度依赖性,并且在两个温度(即冷变性和热变性温度)处被肽链构象自由度损失引起的始终不稳定的吉布斯能贡献精确抵消。

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