• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

相似文献

1
Microarray-based evaluation of whole-community genome DNA amplification methods.基于微阵列的全社区基因组 DNA 扩增方法评估。
Appl Environ Microbiol. 2011 Jun;77(12):4241-5. doi: 10.1128/AEM.01834-10. Epub 2011 Apr 15.
2
Assessment of REPLI-g Multiple Displacement Whole Genome Amplification (WGA) Techniques for Metagenomic Applications.用于宏基因组学应用的REPLI-g多重置换全基因组扩增(WGA)技术评估
J Biomol Tech. 2017 Apr;28(1):46-55. doi: 10.7171/jbt.17-2801-008. Epub 2017 Mar 21.
3
PCR amplification-independent methods for detection of microbial communities by the high-density microarray PhyloChip.通过高密度微阵列 PhyloChip 进行微生物群落检测的 PCR 扩增独立方法。
Appl Environ Microbiol. 2011 Sep;77(18):6313-22. doi: 10.1128/AEM.05262-11. Epub 2011 Jul 15.
4
Profiling in situ microbial community structure with an amplification microarray.用扩增微阵列进行原位微生物群落结构分析。
Appl Environ Microbiol. 2013 Feb;79(3):799-807. doi: 10.1128/AEM.02664-12. Epub 2012 Nov 16.
5
Something from (almost) nothing: the impact of multiple displacement amplification on microbial ecology.无中生有:多重置换扩增对微生物生态学的影响
ISME J. 2008 Mar;2(3):233-41. doi: 10.1038/ismej.2008.10. Epub 2008 Feb 7.
6
Impact of Contaminating DNA in Whole-Genome Amplification Kits Used for Metagenomic Shotgun Sequencing for Infection Diagnosis.用于感染诊断的宏基因组鸟枪法测序的全基因组扩增试剂盒中污染DNA的影响。
J Clin Microbiol. 2017 Jun;55(6):1789-1801. doi: 10.1128/JCM.02402-16. Epub 2017 Mar 29.
7
Metagenomics for studying unculturable microorganisms: cutting the Gordian knot.用于研究不可培养微生物的宏基因组学:快刀斩乱麻。
Genome Biol. 2005;6(8):229. doi: 10.1186/gb-2005-6-8-229. Epub 2005 Aug 1.
8
Characterizing Repeats in Two Whole-Genome Amplification Methods in the Reniform Nematode Genome.肾形线虫基因组中两种全基因组扩增方法的重复序列特征分析
Int J Genomics. 2021 Mar 6;2021:5532885. doi: 10.1155/2021/5532885. eCollection 2021.
9
Towards quantitative metagenomics of wild viruses and other ultra-low concentration DNA samples: a rigorous assessment and optimization of the linker amplification method.面向野生病毒和其他超低浓度 DNA 样本的定量宏基因组学:连接扩增方法的严格评估和优化。
Environ Microbiol. 2012 Sep;14(9):2526-37. doi: 10.1111/j.1462-2920.2012.02791.x. Epub 2012 Jun 20.
10
Assessment of whole genome amplification-induced bias through high-throughput, massively parallel whole genome sequencing.通过高通量、大规模平行全基因组测序评估全基因组扩增诱导的偏差。
BMC Genomics. 2006 Aug 23;7:216. doi: 10.1186/1471-2164-7-216.

引用本文的文献

1
Nitrogen Cycle Evaluation (NiCE) Chip for Simultaneous Analysis of Multiple N Cycle-Associated Genes.用于同时分析多个 N 循环相关基因的氮循环评估(NiCE)芯片。
Appl Environ Microbiol. 2018 Apr 2;84(8). doi: 10.1128/AEM.02615-17. Print 2018 Apr 15.
2
Whole metagenome profiles of particulates collected from the International Space Station.从国际空间站采集的颗粒物的全宏基因组图谱。
Microbiome. 2017 Jul 17;5(1):81. doi: 10.1186/s40168-017-0292-4.
3
Viruses in case series of tumors: Consistent presence in different cancers in the same subject.肿瘤病例系列中的病毒:同一受试者不同癌症中持续存在。
PLoS One. 2017 Mar 3;12(3):e0172308. doi: 10.1371/journal.pone.0172308. eCollection 2017.
4
Alterations of Bacteroides sp., Neisseria sp., Actinomyces sp., and Streptococcus sp. populations in the oropharyngeal microbiome are associated with liver cirrhosis and pneumonia.口咽微生物群中拟杆菌属、奈瑟菌属、放线菌属和链球菌属菌群的改变与肝硬化和肺炎有关。
BMC Infect Dis. 2015 Jun 23;15:239. doi: 10.1186/s12879-015-0977-x.
5
Metagenomic analysis of the airborne environment in urban spaces.城市空间空气环境的宏基因组分析。
Microb Ecol. 2015 Feb;69(2):346-55. doi: 10.1007/s00248-014-0517-z. Epub 2014 Oct 29.
6
Caught in the middle with multiple displacement amplification: the myth of pooling for avoiding multiple displacement amplification bias in a metagenome.陷入多重置换扩增的困境:关于在宏基因组中避免多重置换扩增偏倚而进行池化的谬论。
Microbiome. 2014 Jan 30;2(1):3. doi: 10.1186/2049-2618-2-3.
7
Testing the reproducibility of multiple displacement amplification on genomes of clonal endosymbiont populations.检测克隆内共生体群体基因组上多次置换扩增的可重复性。
PLoS One. 2013 Nov 27;8(11):e82319. doi: 10.1371/journal.pone.0082319. eCollection 2013.
8
Fidelity and representativeness of two isothermal multiple displacement amplification systems to preamplify limiting amounts of total RNA.两种等温多重置换扩增系统对极少量总RNA进行预扩增的保真度和代表性
Mol Biotechnol. 2014 Apr;56(4):377-85. doi: 10.1007/s12033-013-9718-9.
9
Detection of Bacillus anthracis DNA in complex soil and air samples using next-generation sequencing.利用下一代测序技术检测复杂土壤和空气中的炭疽芽孢杆菌 DNA。
PLoS One. 2013 Sep 9;8(9):e73455. doi: 10.1371/journal.pone.0073455. eCollection 2013.
10
Use of functional gene arrays for elucidating in situ biodegradation.利用功能基因芯片阐明原位生物降解。
Front Microbiol. 2012 Sep 21;3:339. doi: 10.3389/fmicb.2012.00339. eCollection 2012.

本文引用的文献

1
GeoChip 3.0 as a high-throughput tool for analyzing microbial community composition, structure and functional activity.GeoChip 3.0 作为一种高通量工具,用于分析微生物群落组成、结构和功能活性。
ISME J. 2010 Sep;4(9):1167-79. doi: 10.1038/ismej.2010.46. Epub 2010 Apr 29.
2
Metagenomic analysis reveals a marked divergence in the structure of belowground microbial communities at elevated CO2.宏基因组分析揭示了在升高的 CO2 下,地下微生物群落的结构存在显著差异。
Ecol Lett. 2010 May;13(5):564-75. doi: 10.1111/j.1461-0248.2010.01453.x. Epub 2010 Mar 23.
3
GeoChip-based analysis of functional microbial communities during the reoxidation of a bioreduced uranium-contaminated aquifer.基于GeoChip对生物还原铀污染含水层再氧化过程中功能微生物群落的分析。
Environ Microbiol. 2009 Oct;11(10):2611-26. doi: 10.1111/j.1462-2920.2009.01986.x. Epub 2009 Jul 14.
4
Empirical evaluation of a new method for calculating signal-to-noise ratio for microarray data analysis.用于微阵列数据分析的信噪比计算新方法的实证评估。
Appl Environ Microbiol. 2008 May;74(10):2957-66. doi: 10.1128/AEM.02536-07. Epub 2008 Mar 14.
5
Single-cell genomic sequencing using Multiple Displacement Amplification.使用多重置换扩增的单细胞基因组测序。
Curr Opin Microbiol. 2007 Oct;10(5):510-6. doi: 10.1016/j.mib.2007.08.005. Epub 2007 Oct 17.
6
Large fragment Bst DNA polymerase for whole genome amplification of DNA from formalin-fixed paraffin-embedded tissues.用于从福尔马林固定石蜡包埋组织中进行DNA全基因组扩增的大片段Bst DNA聚合酶。
BMC Genomics. 2006 Dec 12;7:312. doi: 10.1186/1471-2164-7-312.
7
Global molecular and morphological effects of 24-hour chromium(VI) exposure on Shewanella oneidensis MR-1.24小时六价铬暴露对希瓦氏菌MR-1的全球分子和形态学影响。
Appl Environ Microbiol. 2006 Sep;72(9):6331-44. doi: 10.1128/AEM.00813-06.
8
Assessment of whole genome amplification-induced bias through high-throughput, massively parallel whole genome sequencing.通过高通量、大规模平行全基因组测序评估全基因组扩增诱导的偏差。
BMC Genomics. 2006 Aug 23;7:216. doi: 10.1186/1471-2164-7-216.
9
Microarray-based analysis of subnanogram quantities of microbial community DNAs by using whole-community genome amplification.通过全群落基因组扩增对亚纳克级微生物群落DNA进行基于微阵列的分析。
Appl Environ Microbiol. 2006 Jul;72(7):4931-41. doi: 10.1128/AEM.02738-05.
10
Sequencing genomes from single cells by polymerase cloning.通过聚合酶克隆对单细胞基因组进行测序。
Nat Biotechnol. 2006 Jun;24(6):680-6. doi: 10.1038/nbt1214. Epub 2006 May 28.

基于微阵列的全社区基因组 DNA 扩增方法评估。

Microarray-based evaluation of whole-community genome DNA amplification methods.

机构信息

State Key Joint Laboratory of Environmental Stimulation and Pollution Control, School of Environment, Tsinghua University, Beijing, China.

出版信息

Appl Environ Microbiol. 2011 Jun;77(12):4241-5. doi: 10.1128/AEM.01834-10. Epub 2011 Apr 15.

DOI:10.1128/AEM.01834-10
PMID:21498751
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3131669/
Abstract

Three whole-community genome amplification methods, Bst, REPLI-g, and Templiphi, were evaluated using a microarray-based approach. The amplification biases of all methods were <3-fold. For pure-culture DNA, REPLI-g and Templiphi showed less bias than Bst. For community DNA, REPLI-g showed the least bias and highest number of genes, while Bst had the highest success rate and was suitable for low-quality DNA.

摘要

采用基于微阵列的方法评估了三种全社区基因组扩增方法,Bst、REPLI-g 和 Templiphi。所有方法的扩增偏差均<3 倍。对于纯培养 DNA,REPLI-g 和 Templiphi 的偏差小于 Bst。对于社区 DNA,REPLI-g 表现出最小的偏差和最多的基因,而 Bst 具有最高的成功率,并且适用于低质量的 DNA。