Department of Chemistry, Iowa State University, Ames, Iowa 50011, United States.
J Phys Chem A. 2011 May 12;115(18):4598-609. doi: 10.1021/jp201039b. Epub 2011 Apr 19.
The accurate representation of nitrogen-containing heterocycles is essential for modeling biological systems. In this study, the general effective fragment potential (EFP2) method is used to model dimers of benzene and pyridine, complexes for which high-level theoretical data -including large basis spin-component-scaled second-order perturbation theory (SCS-MP2), symmetry-adapted perturbation theory (SAPT), and coupled cluster with singles, doubles, and perturbative triples (CCSD(T))-are available. An extensive comparison of potential energy curves and components of the interaction energy is presented for sandwich, T-shaped, parallel displaced, and hydrogen-bonded structures of these dimers. EFP2 and CCSD(T) potential energy curves for the sandwich, T-shaped, and hydrogen-bonded dimers have an average root-mean-square deviation (RMSD) of 0.49 kcal/mol; EFP2 and SCS-MP2 curves for the parallel displaced dimers have an average RMSD of 0.52 kcal/mol. Additionally, results are presented from an EFP2 Monte Carlo/simulated annealing (MC/SA) computation to sample the potential energy surface of the benzene-pyridine and pyridine dimers.
含氮杂环的准确表示对于模拟生物系统至关重要。在这项研究中,采用了通用有效片段势能(EFP2)方法来模拟苯和吡啶的二聚体,这些复合物具有高水平的理论数据,包括大基自旋分量标度二级微扰理论(SCS-MP2)、对称适应微扰理论(SAPT)和单、双和微扰三的耦合簇(CCSD(T))。本文对这些二聚体的夹心型、T 型、平行位移和氢键结构的势能曲线和相互作用能分量进行了广泛比较。夹心型、T 型和氢键型二聚体的 EFP2 和 CCSD(T)势能曲线的平均均方根偏差(RMSD)为 0.49 kcal/mol;平行位移二聚体的 EFP2 和 SCS-MP2 曲线的平均 RMSD 为 0.52 kcal/mol。此外,还介绍了 EFP2 蒙特卡罗/模拟退火(MC/SA)计算的结果,以采样苯-吡啶和吡啶二聚体的势能面。