Suppr超能文献

β-半乳糖苷酶和β-葡萄糖醛酸酶四聚体化与蛋白质翻译偶联的动力学分析。

Kinetic analysis of β-galactosidase and β-glucuronidase tetramerization coupled with protein translation.

机构信息

Department of Bioinformatic Engineering, Graduate School of Information Science and Technology, Osaka University, Osaka, Japan.

出版信息

J Biol Chem. 2011 Jun 24;286(25):22028-34. doi: 10.1074/jbc.M111.240168. Epub 2011 Apr 29.

Abstract

Both β-galactosidase (GAL) and β-glucuronidase (GUS) are tetrameric enzymes used widely as reporter proteins. However, little is known about the folding and assembly of these enzymes. Although the refolding kinetics of GAL from a denatured enzyme have been reported, it is not known how the kinetics differ when coupled with a protein translation reaction. Elucidating the assembly kinetics of GAL and GUS when coupled with protein translation will illustrate the differences between these two reporter proteins and also the assembly process under conditions more relevant to those in vivo. In this study, we used an in vitro translation/transcription system to synthesize GAL and GUS, measured the time development of the activity and oligomerization state of these enzymes, and determined the rate constants of the monomer to tetramer assembly process. We found that at similar concentrations, GAL assembles into tetramers faster than GUS. The rate constant of monomer to dimer assembly of GAL was 50-fold faster when coupled with protein translation than that of refolding from the denatured state. Furthermore, GAL synthesis was found to lack the rate-limiting step in the assembly process, whereas GUS has two rate-limiting steps: monomer to dimer assembly and dimer to tetramer assembly. The consequence of these differences when used as reporter proteins is discussed.

摘要

β-半乳糖苷酶(GAL)和β-葡萄糖醛酸酶(GUS)都是广泛用作报告蛋白的四聚体酶。然而,人们对这些酶的折叠和组装知之甚少。尽管已经报道了从变性酶中复性的 GAL 的重折叠动力学,但尚不清楚当与蛋白质翻译反应偶联时动力学有何不同。阐明与蛋白质翻译偶联时 GAL 和 GUS 的组装动力学将阐明这两种报告蛋白之间的差异,以及更接近体内条件下的组装过程。在这项研究中,我们使用体外翻译/转录系统合成 GAL 和 GUS,测量这些酶的活性和寡聚状态的时间发展,并确定单体到四聚体组装过程的速率常数。我们发现,在相似浓度下,GAL 比 GUS更快地组装成四聚体。当与蛋白质翻译偶联时,GAL 的单体到二聚体组装的速率常数比从变性状态复性时快 50 倍。此外,发现 GAL 合成在组装过程中缺乏限速步骤,而 GUS 有两个限速步骤:单体到二聚体组装和二聚体到四聚体组装。讨论了将它们用作报告蛋白时这些差异的后果。

相似文献

1
Kinetic analysis of β-galactosidase and β-glucuronidase tetramerization coupled with protein translation.
J Biol Chem. 2011 Jun 24;286(25):22028-34. doi: 10.1074/jbc.M111.240168. Epub 2011 Apr 29.
2
Effects of compartment size on the kinetics of intracompartmental multimeric protein synthesis.
ACS Synth Biol. 2012 Sep 21;1(9):431-7. doi: 10.1021/sb300041z. Epub 2012 Jul 9.
3
Folding and association of beta-Galactosidase.
J Mol Biol. 1998 Oct 9;282(5):1083-91. doi: 10.1006/jmbi.1998.2075.
4
Bottom-up single-molecule strategy for understanding subunit function of tetrameric β-galactosidase.
Proc Natl Acad Sci U S A. 2018 Aug 14;115(33):8346-8351. doi: 10.1073/pnas.1805690115. Epub 2018 Jul 30.
5
A self-immolative reporter for beta-galactosidase sensing.
Chembiochem. 2007 Mar 26;8(5):560-6. doi: 10.1002/cbic.200600386.
8
Structural basis of specificity in tetrameric Kluyveromyces lactis β-galactosidase.
J Struct Biol. 2012 Feb;177(2):392-401. doi: 10.1016/j.jsb.2011.11.031. Epub 2011 Dec 13.
10
Exchange of active site residues alters substrate specificity in extremely thermostable β-glycosidase from Thermococcus kodakarensis KOD1.
Enzyme Microb Technol. 2015 Sep;77:14-20. doi: 10.1016/j.enzmictec.2015.05.002. Epub 2015 May 18.

引用本文的文献

1
Simultaneous in vitro expression of minimal 21 transfer RNAs by tRNA array method.
Nat Commun. 2025 Aug 26;16(1):7418. doi: 10.1038/s41467-025-62588-y.
2
a robust synthetic reporter for monitoring ethylene responses in plants.
bioRxiv. 2025 May 28:2025.05.23.655144. doi: 10.1101/2025.05.23.655144.
3
Proteolytic stability and aggregation in a key metabolic enzyme of bacteria.
Proc Natl Acad Sci U S A. 2024 May 7;121(19):e2301458121. doi: 10.1073/pnas.2301458121. Epub 2024 Apr 29.
4
Atlas: automatic modeling of regulation of bacterial gene expression and metabolism using rule-based languages.
Bioinformatics. 2021 Apr 1;36(22-23):5473-5480. doi: 10.1093/bioinformatics/btaa1040.
5
Mature Luffa Leaves ( L.) as a Tool for Gene Expression Analysis by Agroinfiltration.
Front Plant Sci. 2017 Feb 21;8:228. doi: 10.3389/fpls.2017.00228. eCollection 2017.
6
High resolution crystal structure of human β-glucuronidase reveals structural basis of lysosome targeting.
PLoS One. 2013 Nov 19;8(11):e79687. doi: 10.1371/journal.pone.0079687. eCollection 2013.
7
In vitro evolution of α-hemolysin using a liposome display.
Proc Natl Acad Sci U S A. 2013 Oct 15;110(42):16796-801. doi: 10.1073/pnas.1314585110. Epub 2013 Sep 30.
8
Directed Evolution of Proteins through In Vitro Protein Synthesis in Liposomes.
J Nucleic Acids. 2012;2012:923214. doi: 10.1155/2012/923214. Epub 2012 Aug 16.

本文引用的文献

2
Quantifying epistatic interactions among the components constituting the protein translation system.
Mol Syst Biol. 2009;5:297. doi: 10.1038/msb.2009.50. Epub 2009 Aug 18.
4
Converging concepts of protein folding in vitro and in vivo.
Nat Struct Mol Biol. 2009 Jun;16(6):574-81. doi: 10.1038/nsmb.1591.
6
Macromolecular crowding and confinement: biochemical, biophysical, and potential physiological consequences.
Annu Rev Biophys. 2008;37:375-97. doi: 10.1146/annurev.biophys.37.032807.125817.
7
Comprehensive analysis of the effects of Escherichia coli ORFs on protein translation reaction.
Mol Cell Proteomics. 2008 Aug;7(8):1530-40. doi: 10.1074/mcp.M800051-MCP200. Epub 2008 May 2.
8
Effects of osmolytes on hexokinase kinetics combined with macromolecular crowding: test of the osmolyte compatibility hypothesis towards crowded systems.
Comp Biochem Physiol A Mol Integr Physiol. 2007 Oct;148(2):339-45. doi: 10.1016/j.cbpa.2007.05.009. Epub 2007 May 18.
9
Indigogenic substrates for detection and localization of enzymes.
Biotech Histochem. 2007 Apr;82(2):73-103. doi: 10.1080/10520290701375278.
10
Cell-free expression systems for eukaryotic protein production.
Curr Opin Biotechnol. 2006 Aug;17(4):373-80. doi: 10.1016/j.copbio.2006.06.009. Epub 2006 Jul 7.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验